Use new "startsWith" and "endsWith" functions (#74)

HelikarLab · Nov 2, 2022 · dec6985 · dec6985
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commit dec6985
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Showing 4 changed files with 2 additions and 13 deletions.
diff --git a/.github/workflows/dockerhub.yml b/.github/workflows/dockerhub.yml
@@ -53,7 +53,7 @@ jobs:
           images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
           tags: |
             type=semver,pattern={{version}}
-            type=raw,value=latest,enable=${{ startsWith(github.ref, 'refs/tags/master') }}
+            type=raw,value=latest,enable=${{ startsWith(github.ref, 'refs/tags/') && endsWith(github.ref, 'master') }}
 
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v2

diff --git a/Dockerfile b/Dockerfile
@@ -19,9 +19,6 @@ RUN conda config --quiet --add channels conda-forge \
     && sed -i "s/^python 3.*//" /opt/conda/conda-meta/pinned \
     && mamba install --quiet --yes python=${PYTHON_VERSION} \
     && mamba env update --quiet --name=base --file="${HOME}/environment.yaml" \
-    # && mamba install --file "${HOME}/mamba_install.txt" \
-    # && python3 -m pip install -r "${HOME}/pip_install.txt" \
-    #&& mamba env update --name base --file "${ENVIRONMENT_FILE}" \
     && mamba clean --quiet --all --force-pkgs-dirs --yes \
     && R -e "devtools::install_github('babessell1/zFPKM')" \
     # Install jupyter extensions

diff --git a/main/py/tests/environment.yaml b/main/py/tests/environment.yaml
@@ -17,3 +17,4 @@ dependencies:
   - tqdm==4.64.1
   - pip:
     - bioservices==1.10.1
+    - GEOparse==2.0.3
diff --git a/main/py/tests/requirements.txt b/main/py/tests/requirements.txt