- Breaking Changes
-
PETab select: There are some deprecated features that will show up as warnings. In addition:
-
The plotting methods ignore some arguments. You will need to reimplement these with the newer approach, which uses
plotting methods from the PEtab Select library instead. See the model selection notebook for examples. -
All objects containing multiple models (e.g., dictionaries or lists) are now replaced by
petab_select.Models
,
which supports dictionary and list methods.To convert your old list of models:
petab_select.Models(list_of_Model)
-
-
- General
- Hierarchical
- Optimization
- ESSOptimizer: Fix priority for local search startpoints (#1503)
- Fix NLoptOptimizer.repr (#1518)
- Improve exception-handling in SacessOptimizer (#1517)
- Fix ESSOptimizer min of empty sequence (#1510)
- Don't modify sys.path for amici model imports (#1522)
- Set OptimizerResult.optimizer in Optimizer.minimize (#1525)
- SacessOptimizer: More efficient saving of intermediate results (#1529)
- Objective
- Select
- Storage
- Visualize
- Fix flatten of observable mapping with one observable (#1515)