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DSERV-607 Adding 'assayed by' column to allele-frequencies endpoint #313

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DSERV-607 Adding 'assayed by' column to allele-frequencies endpoint #313

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7 changes: 5 additions & 2 deletions src/routers/datatypeRouters/nodes/variants.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -524,11 +524,14 @@ async function variantsAllelesAggregation (input: paramsFormatType): Promise<any
record.annotations.af_eas,
record.annotations.af_fin,
record.annotations.af_nfe,
record.annotations.af_sas
record.annotations.af_sas,
'whole genome sequencing'
]
`

const header = ['chr', 'pos', 'afr', 'ami', 'amr', 'asj', 'eas', 'fin', 'nfe', 'sas']
// currently all GNOMAD annotations were assayed by "whole genome sequencing"

const header = ['chr', 'pos', 'afr', 'ami', 'amr', 'asj', 'eas', 'fin', 'nfe', 'sas', 'assayed by']

const alleles = await (await db.query(query)).all()

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