Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

DSERV-635-dey-predictions #371

Open
wants to merge 8 commits into
base: dev
Choose a base branch
from
Open

Conversation

ian-whaling
Copy link

No description provided.

@ian-whaling ian-whaling requested a review from shengchd February 6, 2025 17:30
Copy link
Contributor

@shengchd shengchd left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

the adapter looks good, will need changes on other files:

  • put an example data file under data/samples
  • add the adapter to LABEL_TO_ADAPTER in active_adapters.py
  • update schema-config.yaml (mainly the properties part)
  • update data_sources.yaml (can wait until the data is in portal)
    @pedrohr can you also take a look to see if I'm missing anything? I suppose we are still keeping schema-config.yaml. There's already a 'variant to phenotype' entry there for GWAS data with different properties, should we add a new entry for 'variant to phenotype V2F' then?

@ian-whaling ian-whaling force-pushed the DSERV-635-dey-predictions branch from d3381d2 to 794aa31 Compare February 6, 2025 20:03
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants