MS SQL Import script

MSSQL/README.md

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+# SNOMED CT DATABASE
+
+MSSQL SQL Scripts to create and populate a MSSQL database with a SNOMED CT terminology release
+
+## Minimum Specification
+
+- MSSQL 2008
+
+# Creating the SNOMED CT DB schema on MS SQL
+
+- Create an empty DB and execute manually script create-database-mssql.sql against it
+
+## Diffences from the PostgreSQL version
+
+- TSQL check for table presentse
+- Changes `uniqueidentifier` for `uuid`
+
+## Manual Installation
+
+- Unpack Full version of SNOMED CT files
+- Copy import.bat into root folder where Full SNOMED CR files were updacked (the root has "Documentation" and "Full" folders only)
+- execute import.bat
+- import.sql script will be generated. Execute it againt desired MS SQL DB 
+
+You may use sqlcmd to execute import.sql
+sqlcmd -b -I -S [server IP/name, port] -d [DB name] -U [User] -P [Password] -i import.sql
+
+Note: If you recieve message that "... Operating system error code 5(Access is denied.)" - please follow https://stackoverflow.com/questions/14555262/cannot-bulk-load-operating-system-error-code-5-access-is-denied

MSSQL/create-database-mssql.sql

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+/* create the Full S-CT data tables */
+
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_concept_f') DROP TABLE curr_concept_f;
+create table curr_concept_f(
+  id varchar(18) not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  definitionstatusid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_description_f') DROP TABLE curr_description_f;
+create table curr_description_f(
+  id varchar(18) not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  conceptid varchar(18) not null,
+  languagecode varchar(2) not null,
+  typeid varchar(18) not null,
+  term text not null,
+  casesignificanceid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_textdefinition_f') DROP TABLE curr_textdefinition_f;
+create table curr_textdefinition_f(
+  id varchar(18) not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  conceptid varchar(18) not null,
+  languagecode varchar(2) not null,
+  typeid varchar(18) not null,
+  term text not null,
+  casesignificanceid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_relationship_f') DROP TABLE curr_relationship_f;
+create table curr_relationship_f(
+  id varchar(18) not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  sourceid varchar(18) not null,
+  destinationid varchar(18) not null,
+  relationshipgroup varchar(18) not null,
+  typeid varchar(18) not null,
+  characteristictypeid varchar(18) not null,
+  modifierid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_stated_relationship_f') DROP TABLE curr_stated_relationship_f;
+create table curr_stated_relationship_f(
+  id varchar(18) not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  sourceid varchar(18) not null,
+  destinationid varchar(18) not null,
+  relationshipgroup varchar(18) not null,
+  typeid varchar(18) not null,
+  characteristictypeid varchar(18) not null,
+  modifierid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_langrefset_f') DROP TABLE curr_langrefset_f;
+create table curr_langrefset_f(
+  id uniqueidentifier  not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  refsetid varchar(18) not null,
+  referencedcomponentid varchar(18) not null,
+  acceptabilityid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_associationrefset_f') DROP TABLE curr_associationrefset_f;
+create table curr_associationrefset_f(
+  id uniqueidentifier not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  refsetid varchar(18) not null,
+  referencedcomponentid varchar(18) not null,
+  targetcomponentid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_attributevaluerefset_f') DROP TABLE curr_attributevaluerefset_f;
+create table curr_attributevaluerefset_f(
+  id uniqueidentifier not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  refsetid varchar(18) not null,
+  referencedcomponentid varchar(18) not null,
+  valueid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_simplerefset_f') DROP TABLE curr_simplerefset_f;
+create table curr_simplerefset_f(
+  id uniqueidentifier not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  refsetid varchar(18) not null,
+  referencedcomponentid varchar(18) not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_simplemaprefset_f') DROP TABLE curr_simplemaprefset_f;
+create table curr_simplemaprefset_f(
+  id uniqueidentifier not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  refsetid varchar(18) not null,
+  referencedcomponentid varchar(18) not null,
+  maptarget text not null,
+  PRIMARY KEY(id, effectivetime)
+);
+
+IF EXISTS(SELECT 1 FROM information_schema.tables WHERE table_name = 'curr_extendedmaprefset_f') DROP TABLE curr_extendedmaprefset_f;
+create table curr_extendedmaprefset_f(
+  id uniqueidentifier not null,
+  effectivetime char(8) not null,
+  active char(1) not null,
+  moduleid varchar(18) not null,
+  refsetid varchar(18) not null,
+  referencedcomponentid varchar(18) not null,
+  mapGroup smallint not null,
+  mapPriority smallint not null,
+  mapRule text,
+  mapAdvice text,
+  mapTarget text,
+  correlationId varchar(18),
+  mapCategoryId varchar(18),
+  PRIMARY KEY(id, effectivetime)
+)

MSSQL/import.bat

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+@echo off
+@echo --Importing SNOMED CT into MS SQL DB> import.sql
+@echo TRUNCATE TABLE curr_extendedmaprefset_f;>> import.sql
+@echo TRUNCATE TABLE curr_simplemaprefset_f;>> import.sql
+@echo TRUNCATE TABLE curr_attributevaluerefset_f;>> import.sql
+@echo TRUNCATE TABLE curr_simplerefset_f;>> import.sql
+@echo TRUNCATE TABLE curr_associationrefset_f;>> import.sql
+@echo TRUNCATE TABLE curr_langrefset_f;>> import.sql
+@echo TRUNCATE TABLE curr_stated_relationship_f;>> import.sql
+@echo TRUNCATE TABLE curr_relationship_f;>> import.sql
+@echo TRUNCATE TABLE curr_description_f;>> import.sql
+@echo TRUNCATE TABLE curr_concept_f;>> import.sql
+
+IF NOT EXIST Full\Terminology\sct2_Concept_Full_INT_* (
+	@echo Cannot find Full\Terminology\sct2_Concept_Full_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Terminology\sct2_Concept_Full_INT_*) do ( 
+@echo BULK INSERT curr_concept_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Terminology\sct2_Description_Full-en_INT_* (
+	@echo Cannot find Full\Terminology\sct2_Description_Full-en_INT_
+	EXIT /B 1
+)
+for /r %%i in (Full\Terminology\sct2_Description_Full-en_INT_*) do ( 
+@echo BULK INSERT curr_description_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Terminology\sct2_TextDefinition_Full-en_INT_* (
+	@echo Cannot find Full\Terminology\sct2_TextDefinition_Full-en_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Terminology\sct2_TextDefinition_Full-en_INT_*) do ( 
+@echo BULK INSERT curr_textdefinition_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Terminology\sct2_Relationship_Full_INT_* (
+	@echo Cannot find Full\Terminology\sct2_Relationship_Full_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Terminology\sct2_Relationship_Full_INT_*) do ( 
+@echo BULK INSERT curr_relationship_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Terminology\sct2_StatedRelationship_Full_INT_* (
+	@echo Cannot find Full\Terminology\sct2_StatedRelationship_Full_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Terminology\sct2_StatedRelationship_Full_INT_*) do ( 
+@echo BULK INSERT curr_stated_relationship_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Refset\Language\der2_cRefset_LanguageFull-en_INT_* (
+	@echo Cannot find Full\Refset\Language\der2_cRefset_LanguageFull-en_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Refset\Language\der2_cRefset_LanguageFull-en_INT_*) do ( 
+@echo BULK INSERT curr_langrefset_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Refset\Content\der2_cRefset_AssociationReferenceFull_INT_* (
+	@echo Cannot find Full\Refset\Content\der2_cRefset_AssociationReferenceFull_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Refset\Content\der2_cRefset_AssociationReferenceFull_INT_*) do ( 
+@echo BULK INSERT curr_associationrefset_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Refset\Content\der2_Refset_SimpleFull_INT_* (
+	@echo Cannot find Full\Refset\Content\der2_Refset_SimpleFull_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Refset\Content\der2_Refset_SimpleFull_INT_*) do ( 
+@echo BULK INSERT curr_simplerefset_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Refset\Content\der2_cRefset_AttributeValueFull_INT_* (
+	@echo Cannot find Full\Refset\Content\der2_cRefset_AttributeValueFull_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Refset\Content\der2_cRefset_AttributeValueFull_INT_*) do ( 
+@echo BULK INSERT curr_attributevaluerefset_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Refset\Map\der2_sRefset_SimpleMapFull_INT_* (
+	@echo Cannot find Full\Refset\Map\der2_sRefset_SimpleMapFull_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Refset\Map\der2_sRefset_SimpleMapFull_INT_*) do ( 
+@echo BULK INSERT curr_simplemaprefset_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+
+IF NOT EXIST Full\Refset\Map\der2_iisssccRefset_ExtendedMapFull_INT_* (
+	@echo Cannot find Full\Refset\Map\der2_iisssccRefset_ExtendedMapFull_INT_*
+	EXIT /B 1
+)
+for /r %%i in (Full\Refset\Map\der2_iisssccRefset_ExtendedMapFull_INT_*) do ( 
+@echo BULK INSERT curr_extendedmaprefset_f FROM '%%i' WITH (FIRSTROW = 2, FIELDTERMINATOR = '\t', ROWTERMINATOR = '\n', TABLOCK^); >>import.sql
+)
+