Replace SPARQL queries and OWLTools by a ROBOT plugin

Dockerfile

@@ -16,6 +16,7 @@ ENV KGCL_JAVA_VERSION=0.5.1
 ENV SSSOM_JAVA_VERSION=1.1.1
 ENV AMMONITE_VERSION=2.5.9
 ENV SCALA_CLI_VERSION=1.5.4
+ENV OWLTOOLS_VERSION=2020-04-06
 
 # Avoid repeated downloads of script dependencies by mounting the local coursier cache:
 # docker run -v $HOME/.coursier/cache/v1:/tools/.coursier-cache ...
@@ -83,6 +84,17 @@ RUN test "x$TARGETARCH" = xamd64 && ( \
         rm Konclude.zip \
     )
 
+# Install OWLTOOLS.
+RUN wget -nv https://github.com/owlcollab/owltools/releases/download/$OWLTOOLS_VERSION/owltools \
+        -O /tools/owltools && \
+    wget -nv https://github.com/owlcollab/owltools/releases/download/$OWLTOOLS_VERSION/ontology-release-runner \
+        -O /tools/ontology-release-runner && \
+    wget -nv https://github.com/owlcollab/owltools/releases/download/$OWLTOOLS_VERSION/owltools-oort-all.jar \
+        -O /tools/owltools-oort-all.jar && \
+    chmod +x /tools/owltools && \
+    chmod +x /tools/ontology-release-runner && \
+    chmod +x /tools/owltools-oort-all.jar
+
 # Install Jena.
 RUN wget -nv http://archive.apache.org/dist/jena/binaries/apache-jena-$JENA_VERSION.tar.gz -O- | tar xzC /tools && \
     mv /tools/apache-jena-$JENA_VERSION /tools/apache-jena

Makefile

@@ -33,7 +33,6 @@ test_go_mini:
 test_odklite_programs:
 	@./tests/test-program.sh ROBOT robot --version
 	@./tests/test-program.sh DOSDP-TOOLS dosdp-tools -v
-	@./tests/test-program.sh OWLTOOLS owltools --version
 	@./tests/test-program.sh OORT ontology-release-runner --help
 	@./tests/test-program.sh JINJANATOR jinjanate --version
 	@./tests/test-program.sh DICER-CLI dicer-cli --version
@@ -43,6 +42,7 @@ test_odkfull_programs: test_odklite_programs
 	@./tests/test-program.sh KONCLUDE Konclude -h
 	@./tests/test-program.sh SOUFFLE souffle --version
 	@./tests/test-program.sh JENA jena
+	@./tests/test-program.sh OWLTOOLS owltools --version
 	@./tests/test-program.sh AMMONITE sh amm --help
 	@./tests/test-program.sh SCALA-CLI scala-cli --version
 	@./tests/test-program.sh SPARQL sparql --version

docker/odklite/Dockerfile

@@ -3,9 +3,9 @@ LABEL maintainer="[email protected]"
 
 ENV ROBOT_VERSION=1.9.7
 ENV DOSDP_VERSION=0.19.3
-ENV OWLTOOLS_VERSION=2020-04-06
 ENV RELATION_GRAPH=2.3.2
 ENV DICER_VERSION=0.1.0
+ENV ODK_ROBOT_PLUGIN_VERSION=0.1.0
 
 WORKDIR /tools
 ENV JAVA_HOME="/usr"
@@ -58,16 +58,9 @@ RUN wget -nv https://github.com/INCATools/dosdp-tools/releases/download/v$DOSDP_
         -O /tools/simple_pattern_tester.py && \
     chmod 755 /tools/simple_pattern_tester.py
 
-# Install OWLTOOLS.
-RUN wget -nv https://github.com/owlcollab/owltools/releases/download/$OWLTOOLS_VERSION/owltools \
-        -O /tools/owltools && \
-    wget -nv https://github.com/owlcollab/owltools/releases/download/$OWLTOOLS_VERSION/ontology-release-runner \
-        -O /tools/ontology-release-runner && \
-    wget -nv https://github.com/owlcollab/owltools/releases/download/$OWLTOOLS_VERSION/owltools-oort-all.jar \
-        -O /tools/owltools-oort-all.jar && \
-    chmod +x /tools/owltools && \
-    chmod +x /tools/ontology-release-runner && \
-    chmod +x /tools/owltools-oort-all.jar
+# Install ODK plugin for ROBOT
+RUN mkdir -p /tools/robot-plugins && \
+    wget -nv -O /tools/robot-plugins/odk.jar https://github.com/gouttegd/exp-robot-plugin/releases/download/exp-robot-plugin-$ODK_ROBOT_PLUGIN_VERSION/exp.jar
 
 # Install relation-graph
 RUN wget -nv https://github.com/balhoff/relation-graph/releases/download/v$RELATION_GRAPH/relation-graph-cli-$RELATION_GRAPH.tgz && \

odk/odk.py

@@ -406,6 +406,9 @@ class ReportConfig(JsonSchemaMixin):
     sparql_test_on: List[str] = field(default_factory=lambda: ['edit'])
     """Chose which file to run the custom sparql checks. Supported 'edit', any release artefact."""
 
+    upper_ontology: Optional[str] = None
+    """IRI of an upper ontology to check the current ontology against."""
+
 @dataclass_json
 @dataclass
 class DocumentationGroup(JsonSchemaMixin):