Moving the source folder to follow the newer standard for python repo…

…sitories. Fixes aiidaplugins#117
JPchico · Apr 10, 2024 · 5dec96c · 5dec96c
1 parent b6cc218
commit 5dec96c
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Showing 30 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml
@@ -79,7 +79,7 @@ jobs:
 
       - name: Run pytest
         run: |
-          tox -e ${{ matrix.python-version }}-aiida_lammps -- tests/ --cov=./aiida_lammps --cov-append --cov-report=xml --cov-report=term-missing
+          tox -e ${{ matrix.python-version }}-aiida_lammps -- tests/ --cov=./src/aiida_lammps --cov-append --cov-report=xml --cov-report=term-missing
 
       - name: Upload to Codecov
         if: matrix.python-version == 3.10

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -82,7 +82,7 @@ jobs:
 
       - name: Run pytest
         run: |
-          tox -e ${{ matrix.python-version }}-aiida_lammps -- tests/ --cov=./aiida_lammps --cov-append --cov-report=xml --cov-report=term-missing
+          tox -e ${{ matrix.python-version }}-aiida_lammps -- tests/ --cov=./src/aiida_lammps --cov-append --cov-report=xml --cov-report=term-missing
 
       - name: Upload to Codecov
         if: matrix.python-version == 3.10

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -46,7 +46,7 @@
 
 # Settings for the `autoapi.extenstion` automatically generating API docs
 filepath_docs = pathlib.Path(__file__).parent.parent
-filepath_src = filepath_docs.parent / "aiida_lammps"
+filepath_src = filepath_docs.parent / "src/aiida_lammps"
 autoapi_type = "python"
 autoapi_dirs = [filepath_src]
 autoapi_ignore = [filepath_src / "*cli*"]

diff --git a/aiida_lammps/__init__.py → src/aiida_lammps/__init__.py b/aiida_lammps/__init__.py → src/aiida_lammps/__init__.py
diff --git a/aiida_lammps/calculations/__init__.py → src/aiida_lammps/calculations/__init__.py b/aiida_lammps/calculations/__init__.py → src/aiida_lammps/calculations/__init__.py
diff --git a/aiida_lammps/calculations/base.py → src/aiida_lammps/calculations/base.py b/aiida_lammps/calculations/base.py → src/aiida_lammps/calculations/base.py
diff --git a/aiida_lammps/calculations/raw.py → src/aiida_lammps/calculations/raw.py b/aiida_lammps/calculations/raw.py → src/aiida_lammps/calculations/raw.py
diff --git a/aiida_lammps/data/__init__.py → src/aiida_lammps/data/__init__.py b/aiida_lammps/data/__init__.py → src/aiida_lammps/data/__init__.py
diff --git a/aiida_lammps/data/lammps_potentials.json → src/aiida_lammps/data/lammps_potentials.json b/aiida_lammps/data/lammps_potentials.json → src/aiida_lammps/data/lammps_potentials.json
diff --git a/aiida_lammps/data/potential.py → src/aiida_lammps/data/potential.py b/aiida_lammps/data/potential.py → src/aiida_lammps/data/potential.py
diff --git a/aiida_lammps/data/trajectory.py → src/aiida_lammps/data/trajectory.py b/aiida_lammps/data/trajectory.py → src/aiida_lammps/data/trajectory.py
diff --git a/aiida_lammps/parsers/__init__.py → src/aiida_lammps/parsers/__init__.py b/aiida_lammps/parsers/__init__.py → src/aiida_lammps/parsers/__init__.py
diff --git a/aiida_lammps/parsers/base.py → src/aiida_lammps/parsers/base.py b/aiida_lammps/parsers/base.py → src/aiida_lammps/parsers/base.py
diff --git a/aiida_lammps/parsers/inputfile.py → src/aiida_lammps/parsers/inputfile.py b/aiida_lammps/parsers/inputfile.py → src/aiida_lammps/parsers/inputfile.py
diff --git a/aiida_lammps/parsers/parse_raw/__init__.py → ...iida_lammps/parsers/parse_raw/__init__.py b/aiida_lammps/parsers/parse_raw/__init__.py → ...iida_lammps/parsers/parse_raw/__init__.py
diff --git a/aiida_lammps/parsers/parse_raw/final_data.py → ...da_lammps/parsers/parse_raw/final_data.py b/aiida_lammps/parsers/parse_raw/final_data.py → ...da_lammps/parsers/parse_raw/final_data.py
diff --git a/...lammps/parsers/parse_raw/lammps_output.py → ...lammps/parsers/parse_raw/lammps_output.py b/...lammps/parsers/parse_raw/lammps_output.py → ...lammps/parsers/parse_raw/lammps_output.py
diff --git a/aiida_lammps/parsers/parse_raw/trajectory.py → ...da_lammps/parsers/parse_raw/trajectory.py b/aiida_lammps/parsers/parse_raw/trajectory.py → ...da_lammps/parsers/parse_raw/trajectory.py
diff --git a/aiida_lammps/parsers/raw.py → src/aiida_lammps/parsers/raw.py b/aiida_lammps/parsers/raw.py → src/aiida_lammps/parsers/raw.py
diff --git a/aiida_lammps/parsers/utils.py → src/aiida_lammps/parsers/utils.py b/aiida_lammps/parsers/utils.py → src/aiida_lammps/parsers/utils.py
diff --git a/aiida_lammps/parsers/variables_types.json → ...aiida_lammps/parsers/variables_types.json b/aiida_lammps/parsers/variables_types.json → ...aiida_lammps/parsers/variables_types.json
diff --git a/aiida_lammps/utils.py → src/aiida_lammps/utils.py b/aiida_lammps/utils.py → src/aiida_lammps/utils.py
diff --git a/aiida_lammps/validation/__init__.py → src/aiida_lammps/validation/__init__.py b/aiida_lammps/validation/__init__.py → src/aiida_lammps/validation/__init__.py
diff --git a/aiida_lammps/validation/schemas/__init__.py → ...ida_lammps/validation/schemas/__init__.py b/aiida_lammps/validation/schemas/__init__.py → ...ida_lammps/validation/schemas/__init__.py
diff --git a/...mps/validation/schemas/lammps_schema.json → ...mps/validation/schemas/lammps_schema.json b/...mps/validation/schemas/lammps_schema.json → ...mps/validation/schemas/lammps_schema.json
diff --git a/aiida_lammps/validation/utils.py → src/aiida_lammps/validation/utils.py b/aiida_lammps/validation/utils.py → src/aiida_lammps/validation/utils.py
diff --git a/aiida_lammps/workflows/__init__.py → src/aiida_lammps/workflows/__init__.py b/aiida_lammps/workflows/__init__.py → src/aiida_lammps/workflows/__init__.py
diff --git a/aiida_lammps/workflows/base.py → src/aiida_lammps/workflows/base.py b/aiida_lammps/workflows/base.py → src/aiida_lammps/workflows/base.py
diff --git a/aiida_lammps/workflows/md.py → src/aiida_lammps/workflows/md.py b/aiida_lammps/workflows/md.py → src/aiida_lammps/workflows/md.py
diff --git a/aiida_lammps/workflows/relax.py → src/aiida_lammps/workflows/relax.py b/aiida_lammps/workflows/relax.py → src/aiida_lammps/workflows/relax.py