Skip to content

Commit

Permalink
[pre-commit.ci] auto fixes from pre-commit.com hooks
Browse files Browse the repository at this point in the history
for more information, see https://pre-commit.ci
  • Loading branch information
pre-commit-ci[bot] committed Nov 20, 2023
1 parent c5c1cb7 commit c0b5c47
Show file tree
Hide file tree
Showing 4 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion docs/source/reference/api/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ auto/aiida_lammps/data/index
auto/aiida_lammps/parsers/index
auto/aiida_lammps/validation/index
auto/aiida_lammps/workflows/index
```
```
2 changes: 1 addition & 1 deletion docs/source/tutorials/first_md.md
Original file line number Diff line number Diff line change
Expand Up @@ -142,7 +142,7 @@ The parameters have several sections which control different behavior of the cal
- `compute` section specifies which parameters will be calculated and printed to file during the LAMMPS simulation ([see compute command](https://docs.lammps.org/compute.html)).
- `structure`: controls aspects related to the structure handling in {{ LAMMPS }}.
- `thermo`: controls which global thermodynamic information will be calculated and written to file ([see thermo command](https://docs.lammps.org/thermo.html)).
- `md`: controls how the molecular dynamics calculations are performed. Controlling which type of ensemble will be used, eg. [npt](https://docs.lammps.org/fix_nh.html#fix-npt-command), [nvt](https://docs.lammps.org/fix_nh.html#fix-nvt-command), [nve](https://docs.lammps.org/fix_nve.html) as well as initial thermalization parameters such as the [velocities](https://docs.lammps.org/velocity.html) of the particles.
- `md`: controls how the molecular dynamics calculations are performed. Controlling which type of ensemble will be used, eg. [npt](https://docs.lammps.org/fix_nh.html#fix-npt-command), [nvt](https://docs.lammps.org/fix_nh.html#fix-nvt-command), [nve](https://docs.lammps.org/fix_nve.html) as well as initial thermalization parameters such as the [velocities](https://docs.lammps.org/velocity.html) of the particles.

Lastly one needs to define the computational resources needed to perform the calculation
```python
Expand Down
2 changes: 1 addition & 1 deletion docs/source/tutorials/include/scripts/run_md_basic.py
Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,7 @@
"pzz": True,
},
},
"md":{
"md": {
"integration": {
"style": "npt",
"constraints": {
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -143,7 +143,7 @@ passenv = RUN_APIDOC
setenv =
update: RUN_APIDOC = False
changedir = docs
allowlist_externals =
allowlist_externals =
make
rm
echo
Expand Down

0 comments on commit c0b5c47

Please sign in to comment.