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missing DynamicPPL dependency
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jaimerzp committed Sep 17, 2024
1 parent 217d153 commit 7313bda
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171 changes: 160 additions & 11 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,20 @@

julia_version = "1.10.3"
manifest_format = "2.0"
project_hash = "3d0e07880679474c71a76fdf21540d2d6b275ad0"
project_hash = "c885513dd31088f4f7a94be8a194a058ba6e289c"

[[deps.ADTypes]]
git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0"
uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
version = "1.7.1"

[deps.ADTypes.extensions]
ADTypesChainRulesCoreExt = "ChainRulesCore"
ADTypesEnzymeCoreExt = "EnzymeCore"

[deps.ADTypes.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"

[[deps.AbstractFFTs]]
deps = ["LinearAlgebra"]
Expand All @@ -21,6 +34,12 @@ git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd"
uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
version = "5.2.0"

[[deps.AbstractPPL]]
deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"]
git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef"
uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf"
version = "0.8.4"

[[deps.AbstractTrees]]
git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177"
uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
Expand Down Expand Up @@ -117,12 +136,44 @@ git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e"
uuid = "9718e550-a3fa-408a-8086-8db961cd8217"
version = "0.1.1"

[[deps.Bijectors]]
deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"]
git-tree-sha1 = "92edc3544607c4fda1b30357910597e2a70dc5ea"
uuid = "76274a88-744f-5084-9051-94815aaf08c4"
version = "0.13.18"

[deps.Bijectors.extensions]
BijectorsDistributionsADExt = "DistributionsAD"
BijectorsEnzymeExt = "Enzyme"
BijectorsForwardDiffExt = "ForwardDiff"
BijectorsLazyArraysExt = "LazyArrays"
BijectorsReverseDiffExt = "ReverseDiff"
BijectorsTapirExt = "Tapir"
BijectorsTrackerExt = "Tracker"
BijectorsZygoteExt = "Zygote"

[deps.Bijectors.weakdeps]
DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c"
Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

[[deps.Calculus]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
version = "0.5.1"

[[deps.ChainRules]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
git-tree-sha1 = "83806b5196e1e9827db0429a7579824c8b0e03ce"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.70.0"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra"]
git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b"
Expand All @@ -133,6 +184,22 @@ weakdeps = ["SparseArrays"]
[deps.ChainRulesCore.extensions]
ChainRulesCoreSparseArraysExt = "SparseArrays"

[[deps.ChangesOfVariables]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "799b25ca3a8a24936ae7b5c52ad194685fc3e6ef"
uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
version = "0.1.9"
weakdeps = ["InverseFunctions", "Test"]

[deps.ChangesOfVariables.extensions]
ChangesOfVariablesInverseFunctionsExt = "InverseFunctions"
ChangesOfVariablesTestExt = "Test"

[[deps.CommonSolve]]
git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c"
uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2"
version = "0.2.4"

[[deps.CommonSubexpressions]]
deps = ["MacroTools", "Test"]
git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7"
Expand Down Expand Up @@ -210,6 +277,12 @@ git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c"
uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52"
version = "0.1.2"

[[deps.DensityInterface]]
deps = ["InverseFunctions", "Test"]
git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
version = "0.4.0"

[[deps.DiffResults]]
deps = ["StaticArraysCore"]
git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621"
Expand All @@ -231,17 +304,13 @@ deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadG
git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.108"
weakdeps = ["ChainRulesCore", "DensityInterface", "Test"]

[deps.Distributions.extensions]
DistributionsChainRulesCoreExt = "ChainRulesCore"
DistributionsDensityInterfaceExt = "DensityInterface"
DistributionsTestExt = "Test"

[deps.Distributions.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[deps.DocStringExtensions]]
deps = ["LibGit2"]
git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
Expand All @@ -259,6 +328,28 @@ git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
version = "0.6.8"

[[deps.DynamicPPL]]
deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"]
git-tree-sha1 = "a155a80a54e37e6e1f14022ac815ef000aedeed5"
uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8"
version = "0.28.4"

[deps.DynamicPPL.extensions]
DynamicPPLChainRulesCoreExt = ["ChainRulesCore"]
DynamicPPLEnzymeCoreExt = ["EnzymeCore"]
DynamicPPLForwardDiffExt = ["ForwardDiff"]
DynamicPPLMCMCChainsExt = ["MCMCChains"]
DynamicPPLReverseDiffExt = ["ReverseDiff"]
DynamicPPLZygoteRulesExt = ["ZygoteRules"]

[deps.DynamicPPL.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444"

[[deps.FFTW]]
deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d"
Expand Down Expand Up @@ -296,10 +387,22 @@ weakdeps = ["StaticArrays"]
[deps.ForwardDiff.extensions]
ForwardDiffStaticArraysExt = "StaticArrays"

[[deps.Functors]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1"
uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
version = "0.4.12"

[[deps.Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950"
uuid = "46192b85-c4d5-4398-a991-12ede77f4527"
version = "0.1.6"

[[deps.HDF5]]
deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"]
git-tree-sha1 = "e856eef26cf5bf2b0f95f8f4fc37553c72c8641c"
Expand Down Expand Up @@ -488,17 +591,13 @@ deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.27"
weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"]

[deps.LogExpFunctions.extensions]
LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables"
LogExpFunctionsInverseFunctionsExt = "InverseFunctions"

[deps.LogExpFunctions.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"

[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

Expand Down Expand Up @@ -556,6 +655,11 @@ git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.13"

[[deps.MappedArrays]]
git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e"
uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900"
version = "0.4.2"

[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
Expand Down Expand Up @@ -728,6 +832,12 @@ version = "0.4.5"
[deps.Ratios.weakdeps]
FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"

[[deps.RealDot]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9"
uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9"
version = "0.1.0"

[[deps.RecipesBase]]
deps = ["PrecompileTools"]
git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff"
Expand Down Expand Up @@ -757,6 +867,26 @@ git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21"
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
version = "0.4.2+0"

[[deps.Roots]]
deps = ["Accessors", "CommonSolve", "Printf"]
git-tree-sha1 = "3a7c7e5c3f015415637f5debdf8a674aa2c979c4"
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
version = "2.2.1"

[deps.Roots.extensions]
RootsChainRulesCoreExt = "ChainRulesCore"
RootsForwardDiffExt = "ForwardDiff"
RootsIntervalRootFindingExt = "IntervalRootFinding"
RootsSymPyExt = "SymPy"
RootsSymPyPythonCallExt = "SymPyPythonCall"

[deps.Roots.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807"
SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6"
SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c"

[[deps.SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
version = "0.7.0"
Expand Down Expand Up @@ -798,6 +928,12 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
version = "1.10.0"

[[deps.SparseInverseSubset]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852"
uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada"
version = "0.1.2"

[[deps.SpecialFunctions]]
deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14"
Expand Down Expand Up @@ -870,6 +1006,19 @@ git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"
uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
version = "0.3.4"

[[deps.StructArrays]]
deps = ["ConstructionBase", "DataAPI", "Tables"]
git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be"
uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
version = "0.6.18"
weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"]

[deps.StructArrays.extensions]
StructArraysAdaptExt = "Adapt"
StructArraysGPUArraysCoreExt = "GPUArraysCore"
StructArraysSparseArraysExt = "SparseArrays"
StructArraysStaticArraysExt = "StaticArrays"

[[deps.SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
Expand Down
1 change: 1 addition & 0 deletions Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ version = "0.1.6"
AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8"
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
Expand Down
2 changes: 1 addition & 1 deletion src/MicroCanonicalHMC.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ module MicroCanonicalHMC
using LinearAlgebra, Statistics, Adapt, Random, HDF5,
LogDensityProblemsAD, LogDensityProblems, ForwardDiff,
AbstractMCMC, MCMCChains, MCMCDiagnosticTools,
Distributions, ProgressMeter, Markdown
Distributions, ProgressMeter, Markdown, DynamicPPL

export Settings, MCHMC, Sample, Step, Summarize,
TuringTarget, RosenbrockTarget, CustomTarget
Expand Down

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