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@conda-forge @czbiohub-sf @royerlab @PyIFT @LIDS-UNICAMP @dlmbl @scipy-2024-image-analysis

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A multiscale cellular architecture visualization toolkit.

Python 4 1 Updated Feb 18, 2025

Python tool for converting files and office documents to Markdown.

HTML 38,054 1,747 Updated Feb 12, 2025

Programmatically generate SVG (vector) images, animations, and interactive Jupyter widgets

Python 612 65 Updated Jun 24, 2024

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Python 4,281 384 Updated Nov 26, 2024

A complete end-to-end pipeline for LLM interpretability with sparse autoencoders (SAEs) using Llama 3.2, written in pure PyTorch and fully reproducible.

604 35 Updated Nov 29, 2024

Data backend for fast proofreading of cell segmentations in connectomics datasets

Python 23 10 Updated Feb 19, 2025

napari-plugin to analyse collective signalling events

Python 7 1 Updated Sep 12, 2024

SINDER: Repairing the Singular Defects of DINOv2 (ECCV 2024 Oral)

Python 35 1 Updated Sep 22, 2024

Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'

Python 22 3 Updated Dec 16, 2024

A Python 3 library for constructing and drawing hyperbolic geometry

Python 140 25 Updated Mar 16, 2024

Moshi is a speech-text foundation model and full-duplex spoken dialogue framework. It uses Mimi, a state-of-the-art streaming neural audio codec.

Python 7,511 600 Updated Feb 19, 2025

High-quality QR Code generator library in Java, TypeScript/JavaScript, Python, Rust, C++, C.

Java 5,608 1,148 Updated Jan 23, 2025
Python 19 7 Updated Feb 3, 2025

Multi-Object Tracker using Integer Linear Equations

Python 29 5 Updated Feb 3, 2025

🚀⏱️ Official implementation for "neural space-time model for dynamic multi-shot imaging"

Python 33 1 Updated Oct 19, 2024

A Rust library for the Zarr storage format for multidimensional arrays and metadata

Rust 130 16 Updated Feb 17, 2025

Cell tracking and segmentation software

Python 103 14 Updated Feb 13, 2025

pure-Python HistFactory implementation with tensors and autodiff

Python 285 85 Updated Feb 3, 2025

NVIDIA curated collection of educational resources related to general purpose GPU programming.

Jupyter Notebook 199 41 Updated Feb 13, 2025

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

Python 409 19 Updated Feb 18, 2025

reusable widgets made easy

Python 570 43 Updated Feb 17, 2025

Cartographic rendering and mesh analytics powered by PyVista

Python 176 27 Updated Feb 17, 2025

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

Python 2,931 529 Updated Feb 19, 2025

PyVista SciPy 2022-2024 Tutorial

Python 61 7 Updated Feb 17, 2025

A dataset for loading zarr files to be used in machine learning training pipelines

Python 27 1 Updated Aug 29, 2024

A differentiable 3D renderer with Pytorch, Tensorflow and Matlab interfaces

Python 373 23 Updated Oct 23, 2024

Materials for the "Unlocking Dynamic Reproducible Documents: A Quarto Tutorial for Scientific Communication" tutorial at SciPy 2024

JavaScript 9 1 Updated Jul 8, 2024
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