Taxonomic Data Analysis

This repository contains a Python script containerized using Docker to briefly analyze taxonomic data.

Project Structure

.
├── README.md
└── app
    ├── code
    │   ├── Dockerfile
    │   ├── README.md
    │   ├── analysis_script.py
    │   ├── requirements.txt
    │   └── run.sh
    ├── data
    │   ├── README.md
    │   ├── intermediate
    │   │   ├── README.md
    │   │   └── validated_taxonomic_data.csv
    │   ├── output
    │   │   ├── REAMDE.md
    │   │   ├── phylum_counts_bar_chart.png
    │   │   └── phylum_summary.csv
    │   ├── raw
    │   │   ├── README.md
    │   │   └── taxonomic_data.csv
    │   └── taxonomic_data.csv
    └── docs
        ├── README.md
        └── Test_Prepaire.pdf

Prerequisites

• Docker installed on your system.
• Git installed to clone the repository.

Setup Instructions

1. Clone the Repository

git clone https://github.com/Jungal10/Test-taxonomic.git
cd Test-taxonomic/app/code/

2. Build the Docker Image

docker build -t taxonomic-analysis:latest .

3. Run the Analysis

chmod +x ./app/code/run.sh 

./app/code/run.sh