v1.6.1

Kinggerm · Jun 12, 2019 · 40d3594 · 40d3594
1 parent 757639b
commit 40d3594
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Showing 6 changed files with 557 additions and 553 deletions.
diff --git a/GetOrganelleLib/SeedDatabase/animal_mt.fasta b/GetOrganelleLib/SeedDatabase/animal_mt.fasta
diff --git a/GetOrganelleLib/SeedDatabase/embplant_mt.fasta b/GetOrganelleLib/SeedDatabase/embplant_mt.fasta
@@ -5732,4 +5732,3 @@ AGATCCTTGCGTTGACCCTTTCCTGAACCAGAACCGGGGGGGAGGGGTTGAGAGGAAAGAAAAGGGGATC
 CAAATTGACCATCAATCAATAAAGTGAGGGCTTTCCGGACCTTCCCCACCCCTCTTTCCATTCTTCCTTC
 CCCTCTCACCCCCCCTTTTTCAAGAAAGAAGCCCCGCTCCCTAAGAAGGGGCCCCTCTCTGATAAGGAAG
 GAAACGAAAGAATCTCCATTTT
-
diff --git a/GetOrganelleLib/SeedDatabase/embplant_pt.fasta b/GetOrganelleLib/SeedDatabase/embplant_pt.fasta
diff --git a/GetOrganelleLib/SeedDatabase/fungus_mt.fasta b/GetOrganelleLib/SeedDatabase/fungus_mt.fasta
diff --git a/GetOrganelleLib/SeedDatabase/other_pt.fasta b/GetOrganelleLib/SeedDatabase/other_pt.fasta
diff --git a/GetOrganelleLib/versions.py b/GetOrganelleLib/versions.py
@@ -5,14 +5,19 @@ def get_versions():
 
 
 versions = [
+    {"number": "1.6.1",
+     "features": [
+         "1. GetOrganelleLib/SeedDatabase: updated with repeats removed. "
+         " save computational time and generate better target-hitting base coverage estimation.",
+     ]},
     {"number": "1.6.0",
      "features": [
          "1. setup.py added with new installation way.",
          "2. GetOrganelleDep added for easier dependencies installation",
          "3. get_organelle_reads.py -> get_organelle_from_reads.py;"
-         " --max-extending-len, --ex-genes, --which-blast, --which-bowtie2, --which-spades added; "
+         " --max-extending-len, --ex-genes, --which-blast, --which-bowtie2, --which-spades, --zip-files added; "
          "multi-organelle mode supported; add support for fq head @digits; "
-         "--safe,-r,--auto-wss,--soft-max-n-words etc removed"
+         "--safe,-r,--auto-wss,--soft-max-n-words etc removed; --flush-step modified (background mode); "
          "4. get_organelle_from_assembly.py (basically slim + disentangle) added",
          "5. Library/SeqReference -> GetOrganelleLib/SeedDatabase",
          "6. Library/NotationReference -> GetOrganelleLib/LabelDatabase",
Original file line number	Diff line number	Diff line change
Expand Up		@@ -5732,4 +5732,3 @@ AGATCCTTGCGTTGACCCTTTCCTGAACCAGAACCGGGGGGGAGGGGTTGAGAGGAAAGAAAAGGGGATC
		CAAATTGACCATCAATCAATAAAGTGAGGGCTTTCCGGACCTTCCCCACCCCTCTTTCCATTCTTCCTTC
		CCCTCTCACCCCCCCTTTTTCAAGAAAGAAGCCCCGCTCCCTAAGAAGGGGCCCCTCTCTGATAAGGAAG
		GAAACGAAAGAATCTCCATTTT