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GetOrganelle v1.7.1
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@Kinggerm Kinggerm released this 25 Jul 01:56
· 170 commits to master since this release
1.7.1
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Learn about vigilant mode.
  1. Assembly.get_all_circular_paths(): optimized for plastome order - starting from the "single copy contigs at branching points" rather than the previous "largest single copy contig"; the whole potential lsc region are now taking into account for orfs counting for output orientation.
  2. get_organelle_from_reads.py: 1) --ignore-k work for small k disentanglement; 2) fix a bug when input reads are very few; 3) better log info
  3. get_organelle_from_assembly.py: 1) do not convert gfa to fastg during sub-steps; 2) better log info
  4. Assembly.reduce_to_subgraph: limit_offset_current_vertex -> bait_offsets, the former was a risky setting of slim_graph.py since 1.7.0 because of --max-slim-extending-len added, now issue solved.
  5. Utilities/slim_fastg.py: fix a bug with anonym mode
  6. README.md: updated
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