Update spikeinterface version (#852)

* Save LFP as pynwb.ecephys.LFP * Fix formatting * Fix formatting * Update spikeinterface version * Update changelog * Fix CurationV1 get_sorting * Remove release note --------- Co-authored-by: Eric Denovellis <[email protected]>
LorenFrankLab · Mar 7, 2024 · a689162 · a689162
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -18,6 +18,7 @@
     - Replace deprecated calls to `yaml.safe_load()` #834
 
 - Spikesorting:
+    - Increase the required `spikeinterface` version to >=0.99.1 for `get_sorting` method associated with `SpikeSorting` and `CurationV1` tables in spike sorting V1 pipeline. Limit version to <0.100 in case there are other issues with it. #852
     - Bug fix in single artifact interval edge case #859
 
 ## [0.5.0] (February 9, 2024)

diff --git a/environment.yml b/environment.yml
@@ -46,5 +46,5 @@ dependencies:
       - pubnub<=6.4.0
       - pynwb>=2.2.0,<3
       - sortingview>=0.11
-      - spikeinterface>=0.98.2,<0.99
+      - spikeinterface>=0.99.1,<0.100
       - .
diff --git a/pyproject.toml b/pyproject.toml
@@ -55,7 +55,7 @@ dependencies = [
     "ripple_detection",
     "seaborn",
     "sortingview>=0.11",
-    "spikeinterface>=0.98.2,<0.99",
+    "spikeinterface>=0.99.1,<0.100",
     "track_linearization>=2.3",
 ]
 dynamic = ["version"]

diff --git a/src/spyglass/spikesorting/v1/curation.py b/src/spyglass/spikesorting/v1/curation.py
@@ -213,7 +213,7 @@ def get_sorting(cls, key: dict) -> si.BaseSorting:
             }
         ]
 
-        sorting = si.NumpySorting.from_dict(
+        sorting = si.NumpySorting.from_unit_dict(
             units_dict_list, sampling_frequency=sampling_frequency
         )
-Original file line number
+Diff line change
@@ Expand Up / @@ -213,7 +213,7 @@ def get_sorting(cls, key: dict) -> si.BaseSorting: @@
                 }
             ]
-            sorting = si.NumpySorting.from_dict(
+            sorting = si.NumpySorting.from_unit_dict(
                 units_dict_list, sampling_frequency=sampling_frequency
             )
@@ Expand Down @@