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Moseq Pipeline#1056

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samuelbray32 wants to merge 40 commits intomasterLorenFrankLab/spyglass:masterfrom moseqLorenFrankLab/spyglass:moseqCopy head branch name to clipboard

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Commits on Jun 10, 2024

• Add organization tables for keypoint pose data

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Commits on Jun 11, 2024

• Add model training tables

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Commits on Jun 13, 2024

• apply fit moseq model to data

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• add ability to initialize model training from pre-existing model

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• make model names unique

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• add initial tutorial

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Commits on Jun 14, 2024

• add moseq pipeline diagram

  

  Samuel Bray

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Commits on Jun 26, 2024

• get rid of PoseOutput and fetch pose data from PositionOutput

  

  Samuel Bray

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Commits on Aug 6, 2024

• remove PoseOutput and corresponding references

  samuelbray32

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• allow passing of null entries from DLCPoseEstimation to PositionOutput for Pose-dependent analysis

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Commits on Dec 20, 2024

• Apply suggestions from code review

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  CBroz1

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• Merge branch 'master' into moseq

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• lint

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• implement changes from review

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• rename fetch_video_name to fetch_video_path

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  69335a8

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• cleanup outdated usages of PoseOutput

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  fc46b37

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• Cleanup errors from removal of PoseOutput

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• add get_position_interval_epoch

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Commits on Dec 27, 2024

• Add method to get training results pdf

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• Add description and example of hyperparameter sweep

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• move moseq dir definition to spyglass config

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• move moseq config function to method

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• Update changelog

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Commits on Dec 30, 2024

• update pipeline diagram

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Commits on Jan 2, 2025

• Apply suggestions from code review

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  samuelbray32

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  CBroz1

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• move moseq into v1 folder

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• add docstrings

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Commits on Jan 3, 2025

• make video symlink more robust

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  5a33090

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• cleanup setup_project call

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• cleanup config method

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• Implement suggestions from code review

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• cleanup readability of DLCPosV1 make conditions

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• allow key argument when fetching video path

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Commits on Jan 16, 2025

• add moseq dependencies

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• Add moseq install instructions to tutorials

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  2bff705

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• accept key in all get video path functions

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  31014f9

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• Merge branch 'master' into moseq

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  3dacc40

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• fix spelling

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  f61f10c

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• Merge branch 'moseq' of https://github.com/LorenFrankLab/spyglass into moseq

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  committed
  719486b

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• fix spelling

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