Contact: [email protected]
Tools for analysing insertion mutations
| what | where | why |
|---|---|---|
| bwa | http://bio-bwa.sourceforge.net/ | bulk sequence alignments |
| samtools | http://samtools.sourceforge.net/ | BAM manipulation |
| LAST | http://last.cbrc.jp/ | fine-scale realignment |
| minia | http://minia.genouest.org/ | sequence assembly |
| exonerate | https://github.com/adamewing/exonerate.git | realignments during post-filter |
(latest versions unless otherwise specified)
Please find the manual in the doc/ subdirectory.