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Update PASS1B-06 assay-to-tissue mappings
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@jimmyzhen
jimmyzhen committed Nov 13, 2024
1 parent e9ccc5e commit 99c707e
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Showing 3 changed files with 71 additions and 3 deletions.
34 changes: 34 additions & 0 deletions src/MainStudy/pass1b06AssayTissueTreeData.js
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Original file line number Diff line number Diff line change
Expand Up @@ -49,6 +49,7 @@ const pass1b06AssayTissueTreeData = [
['Targeted Tricarboxylic Acid Cycle', 'Heart'],
['Targeted Tricarboxylic Acid Cycle', 'Gastrocnemius'],
['Targeted Tricarboxylic Acid Cycle', 'Hippocampus'],
['Targeted Tricarboxylic Acid Cycle', 'Plasma'],
['Targeted Oxylipins', 'White Adipose'],
['Targeted Oxylipins', 'Brown Adipose'],
['Targeted Oxylipins', 'Liver'],
Expand All @@ -57,6 +58,7 @@ const pass1b06AssayTissueTreeData = [
['Targeted Oxylipins', 'Heart'],
['Targeted Oxylipins', 'Gastrocnemius'],
['Targeted Oxylipins', 'Hippocampus'],
['Targeted Oxylipins', 'Plasma'],
['Targeted Nucleotides', 'White Adipose'],
['Targeted Nucleotides', 'Liver'],
['Targeted Nucleotides', 'Heart'],
Expand All @@ -65,6 +67,7 @@ const pass1b06AssayTissueTreeData = [
['Targeted Keto Acids', 'Liver'],
['Targeted Keto Acids', 'Heart'],
['Targeted Keto Acids', 'Gastrocnemius'],
['Targeted Keto Acids', 'Plasma'],
['Targeted Ethanolamides', 'White Adipose'],
['Targeted Ethanolamides', 'Brown Adipose'],
['Targeted Ethanolamides', 'Liver'],
Expand All @@ -73,6 +76,7 @@ const pass1b06AssayTissueTreeData = [
['Targeted Ethanolamides', 'Heart'],
['Targeted Ethanolamides', 'Gastrocnemius'],
['Targeted Ethanolamides', 'Hippocampus'],
['Targeted Ethanolamides', 'Plasma'],
['Targeted Amines', 'White Adipose'],
['Targeted Amines', 'Brown Adipose'],
['Targeted Amines', 'Liver'],
Expand All @@ -81,6 +85,7 @@ const pass1b06AssayTissueTreeData = [
['Targeted Amines', 'Heart'],
['Targeted Amines', 'Gastrocnemius'],
['Targeted Amines', 'Hippocampus'],
['Targeted Amines', 'Plasma'],
['Targeted Acyl-CoA', 'White Adipose'],
['Targeted Acyl-CoA', 'Liver'],
['Targeted Acyl-CoA', 'Heart'],
Expand All @@ -93,6 +98,7 @@ const pass1b06AssayTissueTreeData = [
['Untargeted Reversed-Phase Positive', 'Heart'],
['Untargeted Reversed-Phase Positive', 'Gastrocnemius'],
['Untargeted Reversed-Phase Positive', 'Hippocampus'],
['Untargeted Reversed-Phase Positive', 'Plasma'],
['Untargeted Reversed-Phase Negative', 'White Adipose'],
['Untargeted Reversed-Phase Negative', 'Brown Adipose'],
['Untargeted Reversed-Phase Negative', 'Liver'],
Expand All @@ -101,6 +107,7 @@ const pass1b06AssayTissueTreeData = [
['Untargeted Reversed-Phase Negative', 'Heart'],
['Untargeted Reversed-Phase Negative', 'Gastrocnemius'],
['Untargeted Reversed-Phase Negative', 'Hippocampus'],
['Untargeted Reversed-Phase Negative', 'Plasma'],
['Untargeted Lipidomics Reversed-Phase Positive', 'White Adipose'],
['Untargeted Lipidomics Reversed-Phase Positive', 'Brown Adipose'],
['Untargeted Lipidomics Reversed-Phase Positive', 'Liver'],
Expand All @@ -109,6 +116,7 @@ const pass1b06AssayTissueTreeData = [
['Untargeted Lipidomics Reversed-Phase Positive', 'Heart'],
['Untargeted Lipidomics Reversed-Phase Positive', 'Gastrocnemius'],
['Untargeted Lipidomics Reversed-Phase Positive', 'Hippocampus'],
['Untargeted Lipidomics Reversed-Phase Positive', 'Plasma'],
['Untargeted Lipidomics Reversed-Phase Negative', 'White Adipose'],
['Untargeted Lipidomics Reversed-Phase Negative', 'Brown Adipose'],
['Untargeted Lipidomics Reversed-Phase Negative', 'Liver'],
Expand All @@ -117,6 +125,7 @@ const pass1b06AssayTissueTreeData = [
['Untargeted Lipidomics Reversed-Phase Negative', 'Heart'],
['Untargeted Lipidomics Reversed-Phase Negative', 'Gastrocnemius'],
['Untargeted Lipidomics Reversed-Phase Negative', 'Hippocampus'],
['Untargeted Lipidomics Reversed-Phase Negative', 'Plasma'],
['Untargeted Ion-Pair Negative', 'White Adipose'],
['Untargeted Ion-Pair Negative', 'Brown Adipose'],
['Untargeted Ion-Pair Negative', 'Liver'],
Expand All @@ -125,14 +134,26 @@ const pass1b06AssayTissueTreeData = [
['Untargeted Ion-Pair Negative', 'Heart'],
['Untargeted Ion-Pair Negative', 'Gastrocnemius'],
['Untargeted Ion-Pair Negative', 'Hippocampus'],
['Untargeted Ion-Pair Negative', 'Plasma'],
['Untargeted HILIC-Positive', 'Vena Cava'],
['Untargeted HILIC-Positive', 'White Adipose'],
['Untargeted HILIC-Positive', 'Brown Adipose'],
['Untargeted HILIC-Positive', 'Liver'],
['Untargeted HILIC-Positive', 'Small Intestine'],
['Untargeted HILIC-Positive', 'Lung'],
['Untargeted HILIC-Positive', 'Ovaries'],
['Untargeted HILIC-Positive', 'Testes'],
['Untargeted HILIC-Positive', 'Spleen'],
['Untargeted HILIC-Positive', 'Colon'],
['Untargeted HILIC-Positive', 'Adrenal'],
['Untargeted HILIC-Positive', 'Kidney'],
['Untargeted HILIC-Positive', 'Heart'],
['Untargeted HILIC-Positive', 'Vastus Lateralis'],
['Untargeted HILIC-Positive', 'Gastrocnemius'],
['Untargeted HILIC-Positive', 'Hypothalamus'],
['Untargeted HILIC-Positive', 'Cortex'],
['Untargeted HILIC-Positive', 'Hippocampus'],
['Untargeted HILIC-Positive', 'Plasma'],
['Protein Ubiquitination', 'Liver'],
['Protein Ubiquitination', 'Heart'],
['Global Proteomics', 'White Adipose'],
Expand All @@ -141,22 +162,35 @@ const pass1b06AssayTissueTreeData = [
['Global Proteomics', 'Kidney'],
['Global Proteomics', 'Heart'],
['Global Proteomics', 'Gastrocnemius'],
['Global Proteomics', 'Cortex'],
['Phosphoproteomics', 'White Adipose'],
['Phosphoproteomics', 'Liver'],
['Phosphoproteomics', 'Lung'],
['Phosphoproteomics', 'Kidney'],
['Phosphoproteomics', 'Heart'],
['Phosphoproteomics', 'Gastrocnemius'],
['Phosphoproteomics', 'Cortex'],
['Acetyl Proteomics', 'Liver'],
['Acetyl Proteomics', 'Heart'],
['RNA-seq', 'Vena Cava'],
['RNA-seq', 'White Adipose'],
['RNA-seq', 'Brown Adipose'],
['RNA-seq', 'Liver'],
['RNA-seq', 'Small Intestine'],
['RNA-seq', 'Lung'],
['RNA-seq', 'Ovaries'],
['RNA-seq', 'Testes'],
['RNA-seq', 'Spleen'],
['RNA-seq', 'Colon'],
['RNA-seq', 'Adrenal'],
['RNA-seq', 'Kidney'],
['RNA-seq', 'Heart'],
['RNA-seq', 'Vastus Lateralis'],
['RNA-seq', 'Gastrocnemius'],
['RNA-seq', 'Hypothalamus'],
['RNA-seq', 'Cortex'],
['RNA-seq', 'Hippocampus'],
['RNA-seq', 'Blood Rna'],
];

export default pass1b06AssayTissueTreeData;
38 changes: 36 additions & 2 deletions src/MainStudy/pass1b_06_assay_tissue.json
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Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,7 @@
"t70-white-adipose"
],
"metab-t-amines": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -39,6 +40,7 @@
"t70-white-adipose"
],
"metab-t-etamidpos": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -49,6 +51,7 @@
"t70-white-adipose"
],
"metab-t-ka": [
"t31-plasma",
"t55-gastrocnemius",
"t58-heart",
"t68-liver",
Expand All @@ -61,6 +64,7 @@
"t70-white-adipose"
],
"metab-t-oxylipneg": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -71,6 +75,7 @@
"t70-white-adipose"
],
"metab-t-tca": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -83,16 +88,28 @@
},
"metabolomics-untargeted": {
"metab-u-hilicpos": [
"t31-plasma",
"t52-hippocampus",
"t53-cortex",
"t54-hypothalamus",
"t55-gastrocnemius",
"t56-vastus-lateralis",
"t58-heart",
"t59-kidney",
"t60-adrenal",
"t61-colon",
"t62-spleen",
"t63-testes",
"t64-ovaries",
"t66-lung",
"t67-small-intestine",
"t68-liver",
"t69-brown-adipose",
"t70-white-adipose"
"t70-white-adipose",
"t99-vena-cava"
],
"metab-u-ionpneg": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -103,6 +120,7 @@
"t70-white-adipose"
],
"metab-u-lrpneg": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -113,6 +131,7 @@
"t70-white-adipose"
],
"metab-u-lrppos": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -123,6 +142,7 @@
"t70-white-adipose"
],
"metab-u-rpneg": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -133,6 +153,7 @@
"t70-white-adipose"
],
"metab-u-rppos": [
"t31-plasma",
"t52-hippocampus",
"t55-gastrocnemius",
"t58-heart",
Expand All @@ -149,6 +170,7 @@
"t68-liver"
],
"prot-ph": [
"t53-cortex",
"t55-gastrocnemius",
"t58-heart",
"t59-kidney",
Expand All @@ -157,6 +179,7 @@
"t70-white-adipose"
],
"prot-pr": [
"t53-cortex",
"t55-gastrocnemius",
"t58-heart",
"t59-kidney",
Expand All @@ -171,14 +194,25 @@
},
"transcriptomics": {
"transcript-rna-seq": [
"t30-blood-rna",
"t52-hippocampus",
"t53-cortex",
"t54-hypothalamus",
"t55-gastrocnemius",
"t56-vastus-lateralis",
"t58-heart",
"t59-kidney",
"t60-adrenal",
"t61-colon",
"t62-spleen",
"t63-testes",
"t64-ovaries",
"t66-lung",
"t67-small-intestine",
"t68-liver",
"t69-brown-adipose",
"t70-white-adipose"
"t70-white-adipose",
"t99-vena-cava"
]
}
}
2 changes: 1 addition & 1 deletion src/MainStudy/studyAssays.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ function StudyAssays() {
chart: {
spacingBottom: 30,
marginRight: 120,
height: 2000,
height: 2600,
},
title: {
align: 'center',
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