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Issues list

Pair detection fails for files containing multiple _1 or _R1 substrings bug
#57 opened May 13, 2021 by pansapiens
1
Output a citation list of tools used
#56 opened Apr 27, 2020 by pansapiens
2
STAR and index versions enhancement
#55 opened Feb 3, 2020 by serine
featureCounts setting paired flag when it shouldn't bug
#54 opened Feb 3, 2020 by serine
@serine
Pair detection fails when pairId appears twice in filename
#53 opened Oct 9, 2019 by pansapiens
2
picard CreateSequenceDictionary should include -Xmx memory setting
#52 opened Aug 9, 2019 by pansapiens
STAR index generation or mapping with --sjfbGTFfile enhancement help wanted
#51 opened Jul 16, 2019 by pansapiens
2
qualimap task should specify memory requirements
#50 opened Jul 15, 2019 by pansapiens
How to include gene descriptions ?
#49 opened May 13, 2019 by tseemann
get_geneids.py should fallback to existing IDs if 'nice' ID discovery fails
#47 opened Mar 7, 2019 by pansapiens
Long input filenames break the pipeline
#46 opened Feb 19, 2019 by pansapiens
1
Ability to explicitly specify pairs
#45 opened Feb 15, 2019 by pansapiens
default fastqc version in conda rnasik needs update
#44 opened Feb 14, 2019 by alexyfyf
Determine if qualimap results are misleading, if so remove/replace it
#43 opened Feb 5, 2019 by pansapiens
Feature addition request
#37 opened Nov 2, 2018 by methylnick
3
Pass JVM memory settings to Picard
#36 opened Oct 24, 2018 by pansapiens
1
Sample data download in docs
#33 opened Aug 20, 2018 by pansapiens
Prototype sabre - demultiplexing addition to RNAsik help wanted
#32 opened Aug 20, 2018 by serine
declaring the reference file directory with -refFiles throws an error
#28 opened Jun 28, 2018 by methylnick
2
Looking for a BASH master to polish up quick install script ! help wanted
#27 opened Jun 19, 2018 by serine
issue with mkLog function bug help wanted
#26 opened Jun 14, 2018 by serine
starWithAnn in 1.4.9
#23 opened Apr 16, 2018 by alexyfyf
6
Help improve alignerReads function help wanted
#14 opened Feb 5, 2018 by serine
Only check for existence of executables if the run requires it enhancement
#13 opened Feb 5, 2018 by pansapiens
5
Idx folders not named properly
#9 opened Dec 14, 2017 by stu2
1
ProTip! What’s not been updated in a month: updated:<2024-12-25.