Crispr Results

Crispr Experiment Report Viewer.

Screenshot

Running

# from crispr/ dir
export FLASK_DEBUG=1
export FLASK_DEBUG=1; python app.py --port 5000

Tests:

python tests/crispr_tests.py

Dependencies

• Python: Flask
• Nodejs: Pileup.js (install into static/js)
• 2bit mm10 reference: Run ./getmm10.sh from crispr/ref dir

Configuration

Example data has been included that works on app start.

You can insert your own data into the crispr/data directory under the following scheme:

/MyReportName/
   /bam/
   /vcf/

To override this data location with your own location.

Create a directory off the root (crispr_results) one called instance, create a config.py inside and put DATA_INDEX_DIRECTORY = '<YOUR PATH HERE>'.