Revert to using aria2c by default.

Can be overriden on the compute node by setting LAXYDL_USE_ARIA2C=no in the environment.
MonashBioinformaticsPlatform · Oct 22, 2024 · 1182818 · 1182818
1 parent 4950df5
commit 1182818
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/...peline_apps/nf-core-rnaseq/templates/job_scripts/nf-core-rnaseq/3.12.0/scripts/run_job.sh b/...peline_apps/nf-core-rnaseq/templates/job_scripts/nf-core-rnaseq/3.12.0/scripts/run_job.sh
@@ -39,7 +39,7 @@ export SINGULARITY_TMPDIR="${TMPDIR}"
 export AUTH_HEADER_FILE="${JOB_PATH}/.private_request_headers"
 export IGNORE_SELF_SIGNED_CERTIFICATE="{{ IGNORE_SELF_SIGNED_CERTIFICATE }}"
 export LAXYDL_BRANCH=master
-export LAXYDL_USE_ARIA2C=no
+export LAXYDL_USE_ARIA2C=${LAXYDL_USE_ARIA2C:-yes}
 export LAXYDL_PARALLEL_DOWNLOADS=8
 
 # These are applied via chmod to all files and directories in the run, upon completion

diff --git a/...ine_apps/nf-core-rnaseq/templates/job_scripts/nf-core-rnaseq/default/input/scripts/env.sh b/...ine_apps/nf-core-rnaseq/templates/job_scripts/nf-core-rnaseq/default/input/scripts/env.sh
@@ -24,7 +24,7 @@ export SINGULARITY_TMPDIR="${TMP}"
 export AUTH_HEADER_FILE="${JOB_PATH}/.private_request_headers"
 export IGNORE_SELF_SIGNED_CERTIFICATE="{{ IGNORE_SELF_SIGNED_CERTIFICATE }}"
 export LAXYDL_BRANCH=master
-export LAXYDL_USE_ARIA2C=yes
+export LAXYDL_USE_ARIA2C=${LAXYDL_USE_ARIA2C:-yes}
 export LAXYDL_PARALLEL_DOWNLOADS=8
 
 # These are applied via chmod to all files and directories in the run, upon completion

diff --git a/...apps/nf-core-rnaseq/templates/job_scripts/nf-core-rnaseq/default/input/scripts/run_job.sh b/...apps/nf-core-rnaseq/templates/job_scripts/nf-core-rnaseq/default/input/scripts/run_job.sh
@@ -39,7 +39,7 @@ export SINGULARITY_TMPDIR="${TMPDIR}"
 export AUTH_HEADER_FILE="${JOB_PATH}/.private_request_headers"
 export IGNORE_SELF_SIGNED_CERTIFICATE="{{ IGNORE_SELF_SIGNED_CERTIFICATE }}"
 export LAXYDL_BRANCH=master
-export LAXYDL_USE_ARIA2C=no
+export LAXYDL_USE_ARIA2C=${LAXYDL_USE_ARIA2C:-yes}
 export LAXYDL_PARALLEL_DOWNLOADS=8
 
 # These are applied via chmod to all files and directories in the run, upon completion