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Update README.md
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pansapiens authored May 15, 2024
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4 changes: 2 additions & 2 deletions m3/README.md
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Expand Up @@ -12,7 +12,7 @@ Reload your Studel Web page, you should see a new RStudio in the sidebar as an o
eg, run:
```bash
mkdir -p ~/.strudel2/apps.d
curl https://raw.githubusercontent.com/MonashBioinformaticsPlatform/rocker-ultra/main/m3/apps.rstudio.yaml >~/.strudel2/apps.d/apps.rstudio.yaml
curl https://raw.githubusercontent.com/MonashBioinformaticsPlatform/rocker-ultra/main/m3/rocker-seurat_4.4.0-5.0.3.strudel.yaml >~/.strudel2/apps.d/rocker-seurat_4.4.0-5.0.3.strudel.yaml
```

_The example apps.rstudio.yaml uses the `IMAGE` environment variable to pull the container image from an https:// URL - this is because I was finding the regular `singularity exec` / `pull` method unreliable on the cluster. This might have been a temporary issue._
Expand Down Expand Up @@ -56,4 +56,4 @@ Host m3a* m3b* m3c* m3d* m3e* m3f* m3g* m3h* m3i* m3j*
LocalForward 8787 127.0.0.1:8787
```

Then just `ssh -i ~/.ssh/m3 username@m3a002` to the compute node from your laptop, and open https://localhost:8787 in your browser.
Then just `ssh -i ~/.ssh/m3 username@m3a002` to the compute node from your laptop, and open https://localhost:8787 in your browser.

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