add species not present in initial conditions for order_species_conce…

…ntration
NCAR · Apr 4, 2024 · 993fbdf · 993fbdf
1 parent dbcbb9f
commit 993fbdf
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/src/music_box_conditions.py b/src/music_box_conditions.py
@@ -56,6 +56,10 @@ def from_UI_JSON(cls, UI_JSON, species_list, reaction_list):
 
             species_concentrations.append(SpeciesConcentration(species, concentration))
 
+        for species in species_list.species:
+            if not any(conc.species.name == species.name for conc in species_concentrations):
+                species_concentrations.append(SpeciesConcentration(species, 0)) 
+
         # Set initial reaction rates
         reaction_rates = []