V3.4.x

.classpath

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+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" path="WEB-INF/src"/>
+	<classpathentry kind="src" path="WEB-INF/test"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/acrobat-core-charset.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/activation.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/addressing-1.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/AdvanceQuery.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/ant-jmeter.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/antlr-2.7.5H3.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/antlr-4.1-complete.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/aopalliance-1.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/asm-3.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/asm-tree-3.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/aspectjrt-1.6.6.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/aspectjtools-1.6.6.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/axis.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/backport-util-concurrent.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/BulkEMPIOperations.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/bulkoperator.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/casclient-2.1.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/castor-0.9.9.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/catiesCC.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/caTissueCdmsIntegration.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/cglib.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/CHIRPS5.0.6.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/ciderIntegration.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/clm.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/cobertura.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/codegen.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/cog-axis.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/cog-jglobus.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/com.ibm.mq.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/com.ibm.mqbind.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/com.ibm.mqjms.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commonpackage-1.3.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-beanutils-1.8.3-1.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-beanutils.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-codec-1.3.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-collections-3.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-dbcp-all-1.3.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-digester.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-digester3-3.0-1.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-discovery.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-fileupload-1.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-fileupload-1.2.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-httpclient-3.0.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-io-1.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-lang.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-logging.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/commons-validator.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/concurrent.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/csmapi.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/DAO-1.1.9.7.jar" sourcepath="/catissue-dao"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/db2jcc_license_cu.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/db2jcc.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/Default_label_barcode_gen.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/dhtmlxconnector.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/dynamicextensions-legacy.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/DynamicExtensions.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/ehcache-1.2.3.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/ext-1.1.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/flex-acrobat.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/flex-bootstrap-jsp.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/flex-bootstrap.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/flex-messaging-common.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/flex-messaging-opt.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/flex-messaging-req.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/flex-messaging.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/gate.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/gson-2.2.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/hibernate3.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/IDPAuthenticationManager0_0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/IdPJar.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/itextpdf-5.3.5.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jackson-annotations-2.2.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jackson-core-2.2.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jackson-core-asl-1.9.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jackson-databind-2.2.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jackson-jaxrs-1.9.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jackson-mapper-asl-1.9.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jackson-xc-1.9.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jakarta-oro-2.0.8.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jasper-compiler-jdt.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jaws.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jaxb-impl.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jaxb-libs.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jaxb-xjc.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jaxen-core.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jaxen-jdom.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jdom.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jep-2.4.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jersey-bundle-1.8.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jettison-1.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jmi.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/json.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jstl.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/jta.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/junit-4.11.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/kxml2-min-2.3.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/label_barcode_gen_client.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/log4j-1.2.9.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/log4j.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/lucene-core-2.0.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/mail.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/mdrapi.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/mmtxProject.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/mockito-all-1.9.5.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/mof.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/mysql-connector-java-5.0.8-bin.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/ojdbc14.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/ontotext.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/opencsv-1.8.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/org-netbeans-graph.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/org-openide-util.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/ParticipantManager.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/PrintCatissueCore_Client.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/printservice_client.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/printservice_module.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/quartz.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/query.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/relaxngDatatype.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/saxpath.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/script-api-1.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/scrubber-runtime.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/securityManager-1.1.7.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/servlet.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/SimpleQuery-1.1.9.2.2.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-aop-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-beans-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-context-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-core-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-expression-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-jdbc-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-orm-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-test-3.1.1.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-tx-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-web-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/spring-webmvc-3.2.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/standard.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/Stinger-2.6.1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/struts-legacy.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/struts.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/swingx-2006_10_08.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/titli-washu-1.0.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/uml-1.4.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/velocity-dep-1.5.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/washu-commons-1.2.w1.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/wsrf_core_stubs.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/wsrf_core.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/wss4j.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/WustlIdp.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/xsdlib.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/xstream-1.4.4.jar"/>
+	<classpathentry kind="lib" path="WEB-INF/lib/xstream-hibernate-1.4.4.jar"/>
+	<classpathentry kind="lib" path="lib/j2ee.jar"/>
+	<classpathentry kind="output" path="WEB-INF/classes"/>
+</classpath>

.gitignore

@@ -0,0 +1,232 @@
+#################
+## Eclipse
+#################
+
+*.pydevproject
+.project
+.metadata
+caTissueSuite_Client/
+bin/
+WEB-INF/classes/
+WEB-INF/bulk*.xml
+WEB-INF/lib/Default_label*.jar
+WEB-INF/lib/caTissue*.jar
+WEB-INF/lib/print*.jar
+css/bulk*.css
+jss/bulk*.js
+some.tmp.file
+tempCatissuecore/
+deploytempCatissuecore/
+CaTissueSuite_caGrid_Service/
+catissue_de_integration_client/
+private*/
+bulkoperator.zip
+catissuecore.war
+print*.jar
+label*.jar
+tmp/
+*.tmp
+*.bak
+*.swp
+*~.nib
+local.properties
+.classpath
+.settings/
+.loadpath
+
+# External tool builders
+.externalToolBuilders/
+
+# Locally stored "Eclipse launch configurations"
+*.launch
+
+# CDT-specific
+.cproject
+
+# PDT-specific
+.buildpath
+
+
+#################
+## Visual Studio
+#################
+
+## Ignore Visual Studio temporary files, build results, and
+## files generated by popular Visual Studio add-ons.
+
+# User-specific files
+*.suo
+*.user
+*.sln.docstates
+
+# Build results
+
+[Dd]ebug/
+[Rr]elease/
+x64/
+build/
+[Bb]in/
+[Oo]bj/
+
+# MSTest test Results
+[Tt]est[Rr]esult*/
+[Bb]uild[Ll]og.*
+
+*_i.c
+*_p.c
+*.ilk
+*.meta
+*.obj
+*.pch
+*.pdb
+*.pgc
+*.pgd
+*.rsp
+*.sbr
+*.tlb
+*.tli
+*.tlh
+*.tmp
+*.tmp_proj
+*.log
+*.vspscc
+*.vssscc
+.builds
+*.pidb
+*.log
+*.scc
+
+# Visual C++ cache files
+ipch/
+*.aps
+*.ncb
+*.opensdf
+*.sdf
+*.cachefile
+
+# Visual Studio profiler
+*.psess
+*.vsp
+*.vspx
+
+# Guidance Automation Toolkit
+*.gpState
+
+# ReSharper is a .NET coding add-in
+_ReSharper*/
+*.[Rr]e[Ss]harper
+
+# TeamCity is a build add-in
+_TeamCity*
+
+# DotCover is a Code Coverage Tool
+*.dotCover
+
+# NCrunch
+*.ncrunch*
+.*crunch*.local.xml
+
+# Installshield output folder
+[Ee]xpress/
+
+# DocProject is a documentation generator add-in
+DocProject/buildhelp/
+DocProject/Help/*.HxT
+DocProject/Help/*.HxC
+DocProject/Help/*.hhc
+DocProject/Help/*.hhk
+DocProject/Help/*.hhp
+DocProject/Help/Html2
+DocProject/Help/html
+
+# Click-Once directory
+publish/
+
+# Publish Web Output
+*.Publish.xml
+*.pubxml
+
+# NuGet Packages Directory
+## TODO: If you have NuGet Package Restore enabled, uncomment the next line
+#packages/
+
+# Windows Azure Build Output
+csx
+*.build.csdef
+
+# Windows Store app package directory
+AppPackages/
+
+# Others
+*.Cache
+ClientBin/
+[Ss]tyle[Cc]op.*
+~$*
+*~
+*.dbmdl
+*.[Pp]ublish.xml
+*.pfx
+*.publishsettings
+
+# RIA/Silverlight projects
+Generated_Code/
+
+# Backup & report files from converting an old project file to a newer
+# Visual Studio version. Backup files are not needed, because we have git ;-)
+_UpgradeReport_Files/
+Backup*/
+UpgradeLog*.XML
+UpgradeLog*.htm
+
+# SQL Server files
+App_Data/*.mdf
+App_Data/*.ldf
+
+#############
+## Windows detritus
+#############
+
+# Windows image file caches
+Thumbs.db
+ehthumbs.db
+
+# Folder config file
+Desktop.ini
+
+# Recycle Bin used on file shares
+$RECYCLE.BIN/
+
+# Mac crap
+.DS_Store
+
+
+#############
+## Python
+#############
+
+*.py[co]
+
+# Packages
+*.egg
+*.egg-info
+dist/
+build/
+eggs/
+parts/
+var/
+sdist/
+develop-eggs/
+.installed.cfg
+
+# Installer logs
+pip-log.txt
+
+# Unit test / coverage reports
+.coverage
+.tox
+
+#Translations
+*.mo
+
+#Mr Developer
+.mr.developer.cfg