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first commit, added some data, very rough draft orgnaization
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@SamGurr
SamGurr committed Dec 18, 2023
1 parent 6e1df6b commit 861e955
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88 changes: 88 additions & 0 deletions RAnalysis/Data/Dstage.data.csv
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Parent,Treatment,Rep,ID,Generation,Year,Run ,Length,Survival ,Normal,Lethal.Deformities,dead,Percent.deformed,total individuals
LOW,Low OA,A,1,1,2021,2,96.86492308,37%,23,1,0,0.042,24
LOW,Low OA,B,2,1,2021,2,99.87604545,26%,28,2,6,0.067,36
LOW,Low OA,C,3,1,2021,2,96.0788125,30%,50,2,4,0.038,56
LOW,Low OA,D,4,1,2021,2,96.11265625,32%,55,5,5,0.083,65
LOW,Low OA,E,5,1,2021,2,95.12751429,31%,46,4,6,0.08,56
MODERATE,Moderate OA,A,6,1,2021,2,,20%,,,,,0
MODERATE,Moderate OA,B,7,1,2021,2,95.27536,22%,63,0,3,0,66
MODERATE,Moderate OA,C,8,1,2021,2,95.39796,18%,51,7,8,0.121,66
MODERATE,Moderate OA,D,9,1,2021,2,93.86782,22%,47,2,4,0.041,53
MODERATE,Moderate OA,E,10,1,2021,2,93.93840426,24%,45,0,4,0,49
HIGH,High OA,A,11,1,2021,2,68.86038889,14%,4,40,0,0.909,44
HIGH,High OA,B,12,1,2021,2,70.2973,11%,3,21,0,0.875,24
HIGH,High OA,C,13,1,2021,2,66.45377778,10%,2,17,1,0.895,20
HIGH,High OA,D,14,1,2021,2,76.81166667,7%,1,23,3,0.958,27
HIGH,High OA,E,15,1,2021,2,,9%,,,,,0
LOW,Low OA,A,1,1,2021,1,,,30,2,10,0.063,42
LOW,Low OA,B,2,1,2021,1,,,32,0,2,0,34
LOW,Low OA,C,3,1,2021,1,,,61,3,10,0.047,74
LOW,Low OA,D,4,1,2021,1,,,42,2,4,0.045,48
MODERATE,Moderate OA,A,5,1,2021,1,,,74,2,6,0.026,82
MODERATE,Moderate OA,B,6,1,2021,1,,,54,2,5,0.036,61
MODERATE,Moderate OA,C,7,1,2021,1,,,18,4,3,0.182,25
MODERATE,Moderate OA,D,8,1,2021,1,,,59,5,10,0.078,74
HIGH,High OA,A,9,1,2021,1,,,2,4,1,0.667,7
HIGH,High OA,B,10,1,2021,1,,,3,21,0,0.875,24
HIGH,High OA,C,11,1,2021,1,,,3,17,0,0.85,20
HIGH,High OA,D,12,1,2021,1,,,4,51,4,0.927,59
LOW,Low OA,A,1,2,2022,3,,,21,1,,0.045,22
LOW,Low OA,B,2,2,2022,3,,,27,4,,0.129,31
LOW,Low OA,C,3,2,2022,3,,,31,5,,0.139,36
MODERATE,Low OA,A,4,2,2022,3,,,8,5,,0.385,13
MODERATE,Low OA,B,5,2,2022,3,,,34,6,,0.15,40
MODERATE,Low OA,C,6,2,2022,3,,,18,2,,0.1,20
HIGH,Low OA,A,7,2,2022,3,,,13,3,,0.188,16
HIGH,Low OA,B,8,2,2022,3,,,23,5,,0.179,28
HIGH,Low OA,C,9,2,2022,3,,,22,4,,0.154,26
LOW,Moderate OA,A,10,2,2022,3,,,30,4,,0.118,34
LOW,Moderate OA,B,11,2,2022,3,,,48,11,,0.186,59
LOW,Moderate OA,C,12,2,2022,3,,,45,4,,0.082,49
MODERATE,Moderate OA,A,13,2,2022,3,,,16,3,,0.158,19
MODERATE,Moderate OA,B,14,2,2022,3,,,14,8,,0.364,22
MODERATE,Moderate OA,C,15,2,2022,3,,,20,7,,0.259,27
HIGH,Moderate OA,A,16,2,2022,3,,,17,0,,0,17
HIGH,Moderate OA,B,17,2,2022,3,,,19,5,,0.208,24
HIGH,Moderate OA,C,18,2,2022,3,,,14,8,,0.364,22
LOW,High OA,A,19,2,2022,3,,,3,27,,0.9,30
LOW,High OA,B,20,2,2022,3,,,3,29,,0.906,32
LOW,High OA,C,21,2,2022,3,,,2,64,,0.97,66
MODERATE,High OA,A,22,2,2022,3,,,2,30,,0.938,32
MODERATE,High OA,B,23,2,2022,3,,,1,42,,0.977,43
MODERATE,High OA,C,24,2,2022,3,,,1,15,,0.938,16
HIGH,High OA,A,25,2,2022,3,,,1,24,,0.96,25
HIGH,High OA,B,26,2,2022,3,,,1,22,,0.957,23
HIGH,High OA,C,27,2,2022,3,,,1,36,,0.973,37
LOW,Low OA,A,1,2,2022,4,,,54,4,4,0.069,62
LOW,Low OA,B,2,2,2022,4,,,28,2,1,0.067,31
lOW,Low OA,C,3,2,2022,4,,,44,7,4,0.137,55
MODERATE,Moderate OA,A,10,2,2022,4,,,41,10,2,0.196,53
MODERATE,Moderate OA,B,11,2,2022,4,,,63,3,6,0.045,72
MODERATE,Moderate OA,C,12,2,2022,4,,,48,4,2,0.077,54
LOW,Low OA,A,1,3,2023,6,,,44,11,1,0.2,56
LOW,Low OA,B,2,3,2023,6,,,14,2,0,0.125,16
LOW,Low OA,C,3,3,2023,6,,,63,27,9,0.3,99
MODERATE,Low OA,A,4,3,2023,6,,,41,20,1,0.328,62
MODERATE,Low OA,B,5,3,2023,6,,,37,6,0,0.14,43
MODERATE,Low OA,C,6,3,2023,6,,,31,19,0,0.38,50
LOW,Moderate OA,A,7,3,2023,6,,,17,15,0,0.469,32
LOW,Moderate OA,B,8,3,2023,6,,,33,15,0,0.313,48
LOW,Moderate OA,C,9,3,2023,6,,,20,15,1,0.429,36
MODERATE,Moderate OA,A,10,3,2023,6,,,17,7,0,0.292,24
MODERATE,Moderate OA,B,11,3,2023,6,,,12,23,0,0.657,35
MODERATE,Moderate OA,C,12,3,2023,6,,,18,21,0,0.538,39
LOW,High OA,A,13,3,2023,6,,,,,,,0
LOW,High OA,B,14,3,2023,6,,,41,30,1,0.423,72
LOW,High OA,C,15,3,2023,6,,,6,21,0,0.778,27
MODERATE,High OA,A,16,3,2023,6,,,42,34,2,0.447,78
MODERATE,High OA,B,17,3,2023,6,,,22,38,2,0.633,62
MODERATE,High OA,C,18,3,2023,6,,,48,52,3,0.52,103
HIGH,Low OA,A,19,3,2023,6,,,32,23,2,0.418,57
HIGH,Low OA,B,20,3,2023,6,,,20,21,1,0.512,42
HIGH,Low OA,C,21,3,2023,6,,,35,24,1,0.407,60
HIGH,Moderate OA,A,22,3,2023,6,,,12,10,1,0.455,23
HIGH,Moderate OA,B,23,3,2023,6,,,29,17,0,0.37,46
HIGH,Moderate OA,C,24,3,2023,6,,,15,14,0,0.483,29
HIGH,High OA,A,25,3,2023,6,,,39,29,0,0.426,68
HIGH,High OA,B,26,3,2023,6,,,51,28,0,0.354,79
HIGH,High OA,C,27,3,2023,6,,,28,30,0,0.517,58
132 changes: 132 additions & 0 deletions RAnalysis/Data/larval_growth.csv
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Generation,Age,Parental_OA,treatment,Rep,ID,Length
2,2,LOW,Low OA,A,1,104.70
2,2,LOW,Low OA,B,2,100.10
2,2,LOW,Low OA,C,3,104.50
2,2,MODERATE,Moderate OA,A,10,104.10
2,2,MODERATE,Moderate OA,B,11,99.20
2,2,MODERATE,Moderate OA,C,12,99.60
2,4,LOW,Low OA,A,1,111.20
2,4,LOW,Low OA,B,2,109.30
2,4,LOW,Low OA,C,3,109.60
2,4,MODERATE,Moderate OA,A,10,108.30
2,4,MODERATE,Moderate OA,B,11,107.10
2,4,MODERATE,Moderate OA,C,12,106.20
2,6,LOW,Low OA,A,1,129.80
2,6,LOW,Low OA,B,2,133.00
2,6,LOW,Low OA,C,3,129.80
2,6,MODERATE,Moderate OA,A,10,128.30
2,6,MODERATE,Moderate OA,B,11,127.90
2,6,MODERATE,Moderate OA,C,12,124.70
2,8,LOW,Low OA,A,1,139.30
2,8,LOW,Low OA,B,2,144.40
2,8,LOW,Low OA,C,3,147.90
2,8,MODERATE,Moderate OA,A,10,142.00
2,8,MODERATE,Moderate OA,B,11,143.30
2,8,MODERATE,Moderate OA,C,12,139.20
2,10,LOW,Low OA,A,1,165.40
2,10,LOW,Low OA,B,2,168.90
2,10,LOW,Low OA,C,3,177.50
2,10,MODERATE,Moderate OA,A,10,169.10
2,10,MODERATE,Moderate OA,B,11,167.60
2,10,MODERATE,Moderate OA,C,12,149.40
2,12,LOW,Low OA,A,1,181.60
2,12,LOW,Low OA,B,2,187.70
2,12,LOW,Low OA,C,3,188.80
2,12,MODERATE,Moderate OA,A,10,175.20
2,12,MODERATE,Moderate OA,B,11,173.30
2,12,MODERATE,Moderate OA,C,12,176.70
2,14,LOW,Low OA,A,1,201.10
2,14,LOW,Low OA,B,2,206.60
2,14,LOW,Low OA,C,3,203.10
2,14,MODERATE,Moderate OA,A,10,194.60
2,14,MODERATE,Moderate OA,B,11,194.80
2,14,MODERATE,Moderate OA,C,12,198.30
2,21,LOW,Low OA,A,1,350.60
2,21,LOW,Low OA,B,2,349.70
2,21,LOW,Low OA,C,3,315.10
2,21,MODERATE,Moderate OA,A,10,320.60
2,21,MODERATE,Moderate OA,B,11,267.20
2,21,MODERATE,Moderate OA,C,12,317.70
1,2,WILD,Low OA,A,1,96.86
1,2,WILD,Low OA,B,2,99.88
1,2,WILD,Low OA,C,3,96.08
1,2,WILD,Low OA,D,4,96.11
1,2,WILD,Low OA,E,5,95.13
1,2,WILD,Moderate OA,B,7,95.28
1,2,WILD,Moderate OA,C,8,95.40
1,2,WILD,Moderate OA,D,9,93.87
1,2,WILD,Moderate OA,E,10,93.94
1,2,WILD,High OA,A,11,68.86
1,2,WILD,High OA,B,12,70.30
1,2,WILD,High OA,C,13,66.45
1,2,WILD,High OA,D,14,76.81
1,4,WILD,Low OA,A,1,107.06
1,4,WILD,Low OA,B,2,110.54
1,4,WILD,Low OA,C,3,106.23
1,4,WILD,Low OA,D,4,107.49
1,4,WILD,Low OA,E,5,107.78
1,4,WILD,Moderate OA,B,7,106.24
1,4,WILD,Moderate OA,C,8,103.19
1,4,WILD,Moderate OA,D,9,102.34
1,4,WILD,Moderate OA,E,10,102.42
1,4,WILD,High OA,A,11,83.00
1,4,WILD,High OA,B,12,79.70
1,4,WILD,High OA,C,13,69.58
1,4,WILD,High OA,D,14,78.50
1,8,WILD,Low OA,A,1,181.13
1,8,WILD,Low OA,B,2,166.50
1,8,WILD,Low OA,C,3,161.25
1,8,WILD,Low OA,D,4,159.13
1,8,WILD,Low OA,E,5,153.31
1,8,WILD,Moderate OA,A,6,146.08
1,8,WILD,Moderate OA,B,7,162.35
1,8,WILD,Moderate OA,C,8,165.43
1,8,WILD,Moderate OA,D,9,156.14
1,8,WILD,Moderate OA,E,10,158.59
1,8,WILD,High OA,A,11,110.00
1,8,WILD,High OA,B,12,83.44
1,8,WILD,High OA,C,13,113.75
1,8,WILD,High OA,D,14,90.58
1,8,WILD,High OA,E,15,93.36
1,10,WILD,Low OA,A,1,193.76
1,10,WILD,Low OA,B,2,174.93
1,10,WILD,Low OA,C,3,181.32
1,10,WILD,Low OA,D,4,177.87
1,10,WILD,Low OA,E,5,183.72
1,10,WILD,Moderate OA,A,6,156.64
1,10,WILD,Moderate OA,B,7,177.28
1,10,WILD,Moderate OA,C,8,178.12
1,10,WILD,Moderate OA,D,9,168.02
1,10,WILD,Moderate OA,E,10,166.61
1,10,WILD,High OA,A,11,136.91
1,10,WILD,High OA,B,12,95.91
1,10,WILD,High OA,C,13,121.27
1,10,WILD,High OA,D,14,90.14
1,10,WILD,High OA,E,15,80.38
1,14,WILD,Low OA,A,1,318.43
1,14,WILD,Low OA,B,2,338.52
1,14,WILD,Low OA,C,3,298.22
1,14,WILD,Low OA,D,4,343.28
1,14,WILD,Low OA,E,5,279.22
1,14,WILD,Moderate OA,A,6,272.64
1,14,WILD,Moderate OA,B,7,284.98
1,14,WILD,Moderate OA,C,8,351.71
1,14,WILD,Moderate OA,D,9,276.39
1,14,WILD,Moderate OA,E,10,298.18
1,14,WILD,High OA,A,11,200.48
1,14,WILD,High OA,B,12,233.26
1,14,WILD,High OA,C,13,192.52
1,14,WILD,High OA,D,14,161.11
1,14,WILD,High OA,E,15,206.54
1,18,WILD,Low OA,A,1,528.73
1,18,WILD,Low OA,B,2,584.18
1,18,WILD,Low OA,C,3,513.17
1,18,WILD,Low OA,D,4,557.09
1,18,WILD,Low OA,E,5,556.62
1,18,WILD,Moderate OA,A,6,533.34
1,18,WILD,Moderate OA,B,7,539.39
1,18,WILD,Moderate OA,C,8,582.50
1,18,WILD,Moderate OA,D,9,595.27
1,18,WILD,Moderate OA,E,10,493.50
1,18,WILD,High OA,A,11,472.62
1,18,WILD,High OA,B,12,384.06
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