Add versions to dependencies, fix other versions

Versions are set to compatibility releases with the ~=. This means versions in the digit not specific are allowed to float, but the last digit given remains fixed.

.github/workflows/deploy-pages.yaml

@@ -13,13 +13,13 @@ jobs:
   deploy-book:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     # Install dependencies
-    - name: Set up Python 3.9
+    - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: 3.9
+        python-version: '3.11'
 
     - name: Install dependencies
       run: |
@@ -35,7 +35,7 @@ jobs:
 
     # Push the book's HTML to github-pages
     - name: GitHub Pages action
-      uses: peaceiris/actions-gh-pages@v3.9.2
+      uses: peaceiris/actions-gh-pages@v4.0.0
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: ./docs/_build/html

.github/workflows/model_attribute_validation.yaml

@@ -10,20 +10,24 @@ jobs:
     #   fail-fast: False
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
+
     - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: '3.10'
-    # - name: Install project
+        python-version: '3.11'
+
+        # - name: Install project
     #   run: |
     #     python -m pip install --upgrade pip
     #     pip install -e ".[develop]"
+
     - name: Install dependencies
       working-directory: ${{runner.workspace}}/WETOStack/
       run: |
         pip install --upgrade pip
         pip install -r requirements.txt
+
     - name: Run validation script
       working-directory: ${{runner.workspace}}/WETOStack/software_attributes/
       run: |

README.md

@@ -35,4 +35,9 @@ Or paste this line directly into your browser bar:
     file://<removed>/wetostack/docs/_build/html/index.html
 
 ```
-Note that the docs/_build folder must be removed and a rebuild done if changes to the software_attributes/database/ yamls are made.
+Note that the docs/_build folder must be removed and a rebuild done if changes to the software_attributes/database/ yamls are made.
+
+## Dependencies
+
+The Python packages required to build this project are listed in `requirements.txt`.
+Additional dependencies for the documentation are in `docs/requirements.txt`.

docs/requirements.txt

@@ -1,11 +1,11 @@
-jupyter-book
-jupyter-cache
-pydata-sphinx-theme
-sphinxcontrib.mermaid
-sphinxcontrib.youtube
-sphinx-simplepdf
+jupyter-book~=1.0
+jupyter-cache~=1.0
+pydata-sphinx-theme~=0.15
+sphinxcontrib.mermaid~=0.9
+sphinxcontrib.youtube~=1.4
+sphinx-simplepdf~=1.6
 
 # attribute tables
 # import altair as alt
-datapane
-pandas
+datapane~=0.17
+pandas~=1.5

requirements.txt

@@ -1,6 +1,7 @@
-jsonschema
+jsonschema~=4.21
 json-schema-for-humans
-matplotlib
-numpy
+matplotlib~=3.9
+numpy~=1.26
+pygraphviz
 pyyaml
 squarify