Skip to content

MSFragger-GUI v4.8 (MSFragger, Peptide/Protein Prophets, Philosopher Reports)
Compare
Choose a tag to compare
@chhh chhh released this 27 Feb 22:05
· 4384 commits to master since this release
v4.8
f46697e

Windows users

  • You may download the .zip file.
    • You can start the jar file with start javaw -jar MSFragger-GUI.jar or java -jar MSFragger-GUI.jar or using the provided .bat script in the zip archive. If Java is configured to auto-run .jar files, double clicking might also work.
  • You may download the .exe file and just run that. Windows 10 might show a UAC prompt, saying that this is not a trusted program, it's up to you whether to run it or not.
    • If you don't have a compatible Java version, you will be redirected to a website where you can download one.

Linux/MacOS users

Download the .zip file and either run the included launcher shell script or just with java -jar MSFragger-GUI.jar.

MSFragger-GUI v4.8 changelog:

v4.8:

  • Introduce notifications about update contents
  • User-message can now be shown without a newer version available
  • Added export button and context menu item to the console to simplify bug reporting by users.

v4.7:

  • Support new packaging of MSFragger jar with onejar.

v4.6:

  • Fix mixed up order of philosopher calls.

v4.5:

  • Show parsed versions of tools in the UI.
  • Print detected versions of tools to console before each run.

v4.4:

  • Only run Philosopher workspace --clean/--init once per analysis.

v4.3:

  • Locale dependency fix for MSfragger parameters panel.
  • Philosopher checks version comparing to GitHub at startup.

v4.2:

  • Fix the issue that Fragger panel constructor could cause IOException and prevent the whole app from loading.

v4.1:

  • Variable mod site definition warning text if cached from older versions.
  • Java 9 warning for Fragger.
  • Non-symmetric precursor mass tolerance and detection of "[*" for var mods.
  • Cache fragger params after a dry-run or a real run.

v4.0:

  • Added version check for MSFragger-GUI itself, comparing to GitHub.
  • Two way sync of decoy/tag prefix used by Peptide Prophet and Philosopher Report.
  • Fix how msfragger jar is auto-found.
  • Added version to msfragger properties.
  • MSFragger version check.
Assets 4
Loading