2025-02-04

• add latency check for cvmfs direct vs CDN
• updated base python version to 3.12.8
  Full Changelog: 2025-01-29...2025-02-04

• add fsl 6.0.7.16 by @stebo85 in NeuroDesk/neurocommand#341
• update freesurfer and nighres by @stebo85 in NeuroDesk/neurocommand#342
• add dicomtools container by @stebo85 in NeuroDesk/neurocommand#343

2025-01-29

What's Changed

• -XX:UseSVE=0 only exists on aarch64 so only add it if it exists by @Vbitz in #265

Full Changelog: 2025-01-24...2025-01-29

2025-01-24

What's Changed

• Quay.io jupyter baseimage by @aswinnarayanan in #257
• update version in neurodesk.yml by @Vbitz in #258
• Change TinyRange share path to /data instead of /share by @Vbitz in #264
• Added workaround for JVM bug on Apple M4
• added docker fix for MacOS to desktop

Full Changelog: 2024-12-06...2025-01-24

2024-12-06

What's Changed

• QSMxT: v7.2.2 patch by @astewartau in NeuroDesk/neurocommand#325

• add heudiconv 1.3.1 by @stebo85 in NeuroDesk/neurocommand#326

• add mriqc 24.0.2 20241108 by @stebo85 in NeuroDesk/neurocommand#327

• add samsrfx v10.003 by @stebo85 in NeuroDesk/neurocommand#329

• add palmettobug 0.0.1 20241119 by @stebo85 in NeuroDesk/neurocommand#330

• add neurodock/pydesigner by @stebo85 in NeuroDesk/neurocommand#331

• Update dcm2niix version to 20241125 by @iishiishii in NeuroDesk/neurocommand#332

• add new cvmfs servers by @stebo85 in NeuroDesk/neurocommand#333
  Full Changelog: NeuroDesk/neurocommand@2024-10-22...2024-12-06

• changed CVMFS servers

• added -w workaround for docker on apple silicon into dockerfile

• add static strace to /opt for container debugging

• enable VNC again and fix RDP autoresizing

2024-10-22

• [use cloudfront distribution only]
• [workaround for kernel bug on arm64]
• [add ipywidgets ipyvolume jupyterlab_widgets]

https://github.com/NeuroDesk/neurocommand/releases/tag/2024-10-22

Full Changelog: 2024-10-16...2024-10-22

2024-10-16

What's Changed

• add /mnt by @MoniDoerig in #226
• rename SINGULARITY_BINDPATH to APPTAINER and add /mnt by @MoniDoerig in #225

New Contributors

• @MoniDoerig made their first contribution in #226

Full Changelog: 2024-05-25...2024-10-16

and all changes from here: https://github.com/NeuroDesk/neurocommand/releases/tag/2024-10-16

2024-05-25

Full Changelog: 2024-03-27...2024-05-25

2024-03-27

What's Changed

• Switch_to_apptainer by @stebo85 in #210
• added (brkraw) and fixed multiple tools (mrtrix3, julia)

2024-01-12

• fixed fsl GUI error, when starting fsl in VNC mode (the USER was not exported)
• removed c.ServerApp.root_dir setting because it was causing an error when clicking on the Home button. Now it's not possible to navigate outside of the homedirectory anymore in the side panel.

2023-11-28

Fix ARM bugs and missing environment variables

• fixed a bug where the /proc/cpuinfo file under ARM did not contain a MHz entry, which stopped Matlab from starting up
• fixed a bug where the SINGULARITY_BINDPATH was not send in a jupyter notebook file