Open-Systems-Pharmacology · rwmcintosh · Feb 14, 2025 · Feb 7, 2025 · Feb 7, 2025 · Feb 7, 2025
diff --git a/.github/workflows/build-and-publish.yml b/.github/workflows/build-and-publish.yml
@@ -0,0 +1,256 @@
+name: Build and Publish NuGet Package for all supported platforms
+
+on:
+  push:
+  pull_request:
+    branches:
+    - master
+
+
+env:
+  MAJOR: 5
+  MINOR: 8
+  RELEASE: 0
+  RUN: ${{ github.run_number }}
+
+jobs:
+  get-version:
+    runs-on: ubuntu-latest
+    outputs:
+      BUILD_ID: ${{ steps.get_build_id.outputs.BUILD_ID}}
+      APP_VERSION: ${{ steps.get_app_version.outputs.APP_VERSION}}
+    steps:
+    - name: Get New Build Number
+      id: get_build_id
+      shell: bash
+      run: |
+
+        # Get the build ID
+        if [[ "${{ github.event_name }}" == 'push' && "${{ github.ref_name }}" == "${{ github.event.repository.default_branch }}" ]]; then
+          # Fetch the latest version from the organization NuGet package
+          response=$(curl -s -L \
+            -H "Accept: application/vnd.github+json" \
+            -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" \
+            -H "X-GitHub-Api-Version: 2022-11-28" \
+            https://api.github.com/orgs/Open-Systems-Pharmacology/packages/nuget/OSPSuite.FuncParser/versions)
+
+          # Log the raw response for debugging
+          echo "API Response: $response"
+
+          # Check if the response indicates a package not found error or is not valid JSON
+          if echo "$response" | jq -e '.message == "Package not found." or (.[0].name // empty | length == 0)' >/dev/null 2>&1; then
+            # Set the build number to 9 if no package is found or response is invalid (since the last released was 5.8.0.8)
+            new_build_id=9
+          else
+            latest_version=$(echo "$response" | jq -r '.[0].name // empty')
+
+            # Extract MAJOR, MINOR, and RELEASE from the latest version
+            IFS='.' read -r last_major last_minor last_release last_build <<< "$latest_version"
+
+            # Compare with the current MAJOR, MINOR, and RELEASE
+            if [[ "$last_major" -eq "${{ env.MAJOR }}" && "$last_minor" -eq "${{ env.MINOR }}" && "$last_release" -eq "${{ env.RELEASE }}" ]]; then
+              # Increment the last number if they match
+              new_build_id=$((last_build + 1))
+            else
+              # Reset build number to 0 if the current version is different
+              new_build_id=0
+            fi
+          fi
+
+          echo "latest build number: ${latest_version:-'None found'}"
+          echo "new build number: ${new_build_id}"
+          build_id="${new_build_id}"
+        else
+          build_id="999${{ env.RUN }}"
+        fi
+
+        echo "New Build ID: ${build_id}"
+        echo "BUILD_ID=${build_id}" >> $GITHUB_ENV
+        echo "::set-output name=BUILD_ID::${build_id}"
+
+    - name: Get App Version
+      id: get_app_version
+      shell: bash
+      run: |
+        app_version="${{ env.MAJOR }}.${{ env.MINOR }}.${{ env.RELEASE }}.${{ env.BUILD_ID }}"
+        echo "App Version: ${app_version}"
+        echo "APP_VERSION=${app_version}" >> $GITHUB_ENV
+        echo "::set-output name=APP_VERSION::${app_version}"
+
+  build-macos-arm64:
+    runs-on: macos-latest
+    needs: get-version
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: 'true'
+
+      - name: define env variables
+        run: |
+          echo "APP_VERSION=${{needs.get-version.outputs.APP_VERSION}}" >> $GITHUB_ENV
+          echo "BUILD_ID=${{needs.get-version.outputs.BUILD_ID}}" >> $GITHUB_ENV
+
+      - name: Build native libraries
+        run: |
+          chmod ugo+x buildNix.sh
+          ./buildNix.sh
+
+      - name: Pack the project        
+        run: |
+          chmod ugo+x createNugetPackage_Nix.sh
+          ./createNugetPackage_Nix.sh ${{env.APP_VERSION}}
+
+      - name: Push nupkg as artifact
+        # if it is a push to a branch
+        if: github.event_name == 'push' && github.ref_name != github.event.repository.default_branch
+        uses: actions/upload-artifact@v4
+        with:
+          name: CVODES.MacOS.Arm64
+          path: ./*.nupkg
+
+      - name: Publish to GitHub registry
+        # if it is a merge to default branch
+        if: github.event_name == 'push' && github.ref_name == github.event.repository.default_branch
+        run: dotnet nuget push ./*.nupkg --source https://nuget.pkg.github.com/${{github.repository_owner}}/index.json --api-key ${{ secrets.GITHUB_TOKEN }}
+
+  build-macos-x64:
+    runs-on: macos-13
+    needs: get-version
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: 'true'
+
+      - name: define env variables
+        run: |
+          echo "APP_VERSION=${{needs.get-version.outputs.APP_VERSION}}" >> $GITHUB_ENV
+          echo "BUILD_ID=${{needs.get-version.outputs.BUILD_ID}}" >> $GITHUB_ENV
+
+      - name: Build native libraries
+        run: |
+          chmod ugo+x buildNix.sh
+          ./buildNix.sh
+
+      - name: Pack the project        
+        run: |
+          chmod ugo+x createNugetPackage_Nix.sh
+          ./createNugetPackage_Nix.sh ${{env.APP_VERSION}}
+
+      - name: Push nupkg as artifact
+        # if it is a push to a branch
+        if: github.event_name == 'push' && github.ref_name != github.event.repository.default_branch
+        uses: actions/upload-artifact@v4
+        with:
+          name: CVODES.MacOS.x64
+          path: ./*.nupkg
+
+      - name: Publish to GitHub registry
+        # if it is a merge to default branch
+        if: github.event_name == 'push' && github.ref_name == github.event.repository.default_branch
+        run: dotnet nuget push ./*.nupkg --source https://nuget.pkg.github.com/${{github.repository_owner}}/index.json --api-key ${{ secrets.GITHUB_TOKEN }}
+
+  build-linux-x64:
+    runs-on: ubuntu-22.04
+    needs: get-version
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: 'true'
+
+      - name: define env variables
+        run: |
+          echo "APP_VERSION=${{needs.get-version.outputs.APP_VERSION}}" >> $GITHUB_ENV
+          echo "BUILD_ID=${{needs.get-version.outputs.BUILD_ID}}" >> $GITHUB_ENV
+
+      - name: Build native libraries
+        run: |
+          chmod ugo+x buildNix.sh
+          ./buildNix.sh
+
+      - name: Pack the project        
+        run: |
+          chmod ugo+x createNugetPackage_Nix.sh
+          ./createNugetPackage_Nix.sh ${{env.APP_VERSION}}
+
+      - name: Push nupkg as artifact
+        # if it is a push to a branch
+        if: github.event_name == 'push' && github.ref_name != github.event.repository.default_branch
+        uses: actions/upload-artifact@v4
+        with:
+          name: CVODES.Ubuntu22
+          path: ./*.nupkg
+
+      - name: Publish to GitHub registry
+        # if it is a merge to default branch
+        if: github.event_name == 'push' && github.ref_name == github.event.repository.default_branch
+        run: dotnet nuget push ./*.nupkg --source https://nuget.pkg.github.com/${{github.repository_owner}}/index.json --api-key ${{ secrets.GITHUB_TOKEN }}
+
+  build-windows-x64:
+    runs-on: windows-latest
+    needs: get-version
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: 'true'
+
+      - name: define env variables
+        run: |
+          echo "APP_VERSION=${{needs.get-version.outputs.APP_VERSION}}" | Out-File -FilePath $env:GITHUB_ENV -Append
+          echo "BUILD_ID=${{needs.get-version.outputs.BUILD_ID}}" | Out-File -FilePath $env:GITHUB_ENV -Append
+
+      - name: Add msbuild to PATH
+        uses: microsoft/setup-msbuild@v2
+
+      - name: build debug
+        run: |
+          if not exist BuildCVODES_Windows mkdir BuildCVODES_Windows
+          echo Compiling for build type = Debug   
+          cmake -BBuildCVODES_Windows/Debug/x64/ -Hsrc/CVODES/ -DCMAKE_BUILD_TYPE=Debug -DEXAMPLES_ENABLE_C=OFF -DBUILD_SHARED_LIBS=OFF -DBUILD_STATIC_LIBS=ON -DENABLE_KLU=OFF -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DKLU_INCLUDE_DIR=BuildSuiteSparse/include/ -DKLU_LIBRARY_DIR=BuildSuiteSparse/lib64/ -DCMAKE_C_FLAGS_RELEASE="/O2 /Ob2 /DNDEBUG /Oi"
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+          msbuild BuildCVODES_Windows/Debug/x64/ALL_BUILD.vcxproj /property:Configuration=Debug
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+          if exist Dist\Windows\Debug\x64 rmdir /S /Q Dist\Windows\Debug\x64
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+          mkdir Dist\Windows\Debug\x64
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+        shell: cmd
+
+      - name: build release
+        run: |
+          if not exist BuildCVODES_Windows mkdir BuildCVODES_Windows
+          echo Compiling for build type = Release   
+          cmake -BBuildCVODES_Windows/Release/x64/ -Hsrc/CVODES/ -DCMAKE_BUILD_TYPE=Release -DEXAMPLES_ENABLE_C=OFF -DBUILD_SHARED_LIBS=OFF -DBUILD_STATIC_LIBS=ON -DENABLE_KLU=OFF -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DKLU_INCLUDE_DIR=BuildSuiteSparse/include/ -DKLU_LIBRARY_DIR=BuildSuiteSparse/lib64/ -DCMAKE_C_FLAGS_RELEASE="/O2 /Ob2 /DNDEBUG /Oi"
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+          msbuild BuildCVODES_Windows/Release/x64/ALL_BUILD.vcxproj /property:Configuration=Release
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+          if exist Dist\Windows\Release\x64 rmdir /S /Q Dist\Windows\Release\x64
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+          mkdir Dist\Windows\Release\x64
+          IF %ERRORLEVEL% NEQ 0 EXIT /B %ERRORLEVEL%
+        shell: cmd
+
+      - name: Pack the project
+        run: ./createNugetPackage_Windows.bat ${{env.APP_VERSION}}
+        shell: cmd
+
+      - name: Push nupkg as artifact
+        # if it is a push to a branch
+        if: github.event_name == 'push' && github.ref_name != github.event.repository.default_branch
+        uses: actions/upload-artifact@v4
+        with:
+          name: CVODES
+          path: ./*.nupkg
+
+      - name: Publish to GitHub registry
+        # if it is a merge to default branch
+        if: github.event_name == 'push' && github.ref_name == github.event.repository.default_branch
+        shell: pwsh
+        run: dotnet nuget push .\CVODES*.nupkg --source https://nuget.pkg.github.com/${{github.repository_owner}}/index.json --api-key ${{ secrets.GITHUB_TOKEN }}
diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
 # CVODES
 
-[![Build status](https://ci.appveyor.com/api/projects/status/4mh7psxcwyhyjohi?svg=true)](https://ci.appveyor.com/project/open-systems-pharmacology-ci/cvodes)
+[![Build status](https://img.shields.io/github/actions/workflow/status/Open-Systems-Pharmacology/CVODES/build-and-publish.yml?logo=nuget&label=Build%20status)](https://github.com/Open-Systems-Pharmacology/CVODES/actions/workflows/build-and-publish.yml)
 
diff --git a/appveyor.yml b/appveyor.yml