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| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn · PALEOsediment Documentation</title><meta name="title" content="Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn · PALEOsediment Documentation"/><meta property="og:title" content="Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn · PALEOsediment Documentation"/><meta property="twitter:title" content="Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn · PALEOsediment Documentation"/><meta name="description" content="Documentation for PALEOsediment Documentation."/><meta property="og:description" content="Documentation for PALEOsediment Documentation."/><meta property="twitter:description" content="Documentation for PALEOsediment Documentation."/><script data-outdated-warner src="../../../assets/warner.js"></script><link 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src="../../../siteinfo.js"></script><script src="../../../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../../../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../../../">PALEOsediment Documentation</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../../../">PALEOsediment.jl documentation</a></li><li><span class="tocitem">Examples and Tutorials</span><ul><li><input class="collapse-toggle" id="menuitem-2-1" type="checkbox" checked/><label class="tocitem" for="menuitem-2-1"><span class="docs-label">CONPSFeMn</span><i class="docs-chevron"></i></label><ul class="collapsed"><li class="is-active"><a class="tocitem" href>Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-2" type="checkbox"/><label class="tocitem" for="menuitem-2-2"><span class="docs-label">boudreau1996</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../boudreau1996/README/">Sediment Boudreau (1996) test cases</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-3" type="checkbox"/><label class="tocitem" for="menuitem-2-3"><span class="docs-label">ironsulphur</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../ironsulphur/README/">Sediment iron-sulphur chemistry examples</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-4" type="checkbox"/><label class="tocitem" for="menuitem-2-4"><span class="docs-label">transport_tests</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../transport_tests/README/">Sediment transport test cases</a></li></ul></li></ul></li><li><span class="tocitem">Design</span><ul><li><a class="tocitem" href="../../../Equations_Units/">Equations, units, and PALEO variable name conventions</a></li></ul></li><li><span class="tocitem">Reference</span><ul><li><a class="tocitem" href="../../../PALEOsediment_Reactions/">PALEOsediment Reactions</a></li></ul></li><li><a class="tocitem" href="../../../References/">References</a></li><li><a class="tocitem" href="../../../indexpage/">Index</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li><a class="is-disabled">Examples and Tutorials</a></li><li><a class="is-disabled">CONPSFeMn</a></li><li class="is-active"><a href>Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOsediment.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOsediment.jl/blob/main/docs/src/collated_examples/CONPSFeMn/README.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Sediment-1D-reaction-transport-configuration-with-C,-O,-N,-P,-S,-Fe,-Mn"><a class="docs-heading-anchor" href="#Sediment-1D-reaction-transport-configuration-with-C,-O,-N,-P,-S,-Fe,-Mn">Sediment 1D reaction-transport configuration with C, O, N, P, S, Fe, Mn</a><a id="Sediment-1D-reaction-transport-configuration-with-C,-O,-N,-P,-S,-Fe,-Mn-1"></a><a class="docs-heading-anchor-permalink" href="#Sediment-1D-reaction-transport-configuration-with-C,-O,-N,-P,-S,-Fe,-Mn" title="Permalink"></a></h1><pre><code class="nohighlight hljs">julia> include("PALEO_examples_sediment_NNFeMn.jl")</code></pre><p>Configuration is similar to shelf and slope test cases in Dale (2015) GBC <a href="https://dx.doi.org/10.1002/2014GB005017">https://dx.doi.org/10.1002/2014GB005017</a>, with:</p><ul><li>a discrete (multi-G) approximation to POC reactive-continuum distribution</li><li>NO2 and NO3 oxidants</li><li>Mn oxides with two reactivity fractions</li><li>Fe oxides with three reactivity fractions</li></ul><p>There are four sediment columns: oxic and anoxic 'shelf', oxic and anoxic 'slope'</p><p>Differences from Dale (2015):</p><ul><li><p>Fe-S system:</p><ul><li>solves speciation between FeII, H2S and FeSaq (Rickard & Luther 2007 <a href="https://dx.doi.org/10.1021/cr0503658">https://dx.doi.org/10.1021/cr0503658</a>) with FeSm preciptiation based on FeSaq solubility threshold.</li><li>Pyrite formation only includes 'Berzelius' pathway (FeSm + H2S -> FeS2pyr + H2)</li><li>No S0 </li></ul></li><li><p>Includes a minimal model for P diagenesis including:</p><ul><li>P coprecipitation on FeHR, FeMR iron oxides</li><li>CFA formation</li></ul><p>See:</p><ul><li>Slomp (1996) <a href="https://dx.doi.org/10.1357/0022240963213745">https://dx.doi.org/10.1357/0022240963213745</a></li><li>Reed (2011) <a href="https://dx.doi.org/10.4319/lo.2011.56.3.1075">https://dx.doi.org/10.4319/lo.2011.56.3.1075</a></li><li>Dale (2016) <a href="https://dx.doi.org/10.1016/j.gca.2016.05.046">https://dx.doi.org/10.1016/j.gca.2016.05.046</a></li><li>Zhao (2020) <a href="https://dx.doi.org/10.1038/s41467-020-15673-3">https://dx.doi.org/10.1038/s41467-020-15673-3</a></li></ul></li></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../../">« PALEOsediment.jl documentation</a><a class="docs-footer-nextpage" href="../../boudreau1996/README/">Sediment Boudreau (1996) test cases 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