0.10.0
This release contains a number of significant enhancements. Most important are:
- Handling of indels within read and assembly alignments (improved small event detection performance)
- Multiple scoring models. Alternative variant scoring models can be chosen by advanced users
- Added VcfBreakendToReadPair utility to help visualise calls
- Updated to htsjdk 2.0.1 for CRAM support
- Various bug fixes including correcting breakpoint orientation of spanned assembly compound events