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0.10.0

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@d-cameron d-cameron released this 05 Jan 03:09
· 1509 commits to master since this release

This release contains a number of significant enhancements. Most important are:

  • Handling of indels within read and assembly alignments (improved small event detection performance)
  • Multiple scoring models. Alternative variant scoring models can be chosen by advanced users
  • Added VcfBreakendToReadPair utility to help visualise calls
  • Updated to htsjdk 2.0.1 for CRAM support
  • Various bug fixes including correcting breakpoint orientation of spanned assembly compound events