GitHub - ParkinsonLab/metaanalysis-chicken-ceca-paper: scripts and tables used to generate figures in chicken cecal microbiome metanalysis paper

ParkinsonLab / metaanalysis-chicken-ceca-paper Public

scripts and tables used to generate figures in chicken cecal microbiome metanalysis paper

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Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
AGP_26425940_otus.txt		AGP_26425940_otus.txt
ChickenType_otu_table_sorted_L2_edited.txt		ChickenType_otu_table_sorted_L2_edited.txt
FecalCecal_taxa.txt		FecalCecal_taxa.txt
README.md		README.md
Salvax_otu_min100.txt		Salvax_otu_min100.txt
Salvax_taxa.txt		Salvax_taxa.txt
V13_FecCec_network_025.txt		V13_FecCec_network_025.txt
V13_perform_network_025.txt		V13_perform_network_025.txt
V13_perform_otus.txt		V13_perform_otus.txt
V68_AGP_network_025.txt		V68_AGP_network_025.txt
V68_AGP_taxa.txt		V68_AGP_taxa.txt
all_studies_updated100_sparcc.txt		all_studies_updated100_sparcc.txt
all_taxa_map.txt		all_taxa_map.txt
arules_pop_comb.R		arules_pop_comb.R
biodiv_otu_min100.txt		biodiv_otu_min100.txt
biodiv_taxa.txt		biodiv_taxa.txt
metaanalysis_figure_generation.py		metaanalysis_figure_generation.py
mgp12337_otus.txt		mgp12337_otus.txt
perform_taxa_map.txt		perform_taxa_map.txt
threshold08_positive.txt		threshold08_positive.txt
updated_network.txt		updated_network.txt