updated url for omeconverter

PolusAI · Oct 3, 2024 · 5ac4a70 · 5ac4a70
1 parent 24d2115
commit 5ac4a70
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Showing 2 changed files with 2 additions and 6 deletions.
diff --git a/cwl_adapters/OmeConverter.cwl b/cwl_adapters/OmeConverter.cwl
@@ -1,10 +1,6 @@
 class: CommandLineTool
 cwlVersion: v1.2
 inputs:
-  fileExtension:
-    inputBinding:
-      prefix: --fileExtension
-    type: string
   filePattern:
     inputBinding:
       prefix: --filePattern
@@ -24,7 +20,7 @@ outputs:
     type: Directory
 requirements:
   DockerRequirement:
-    dockerPull: polusai/ome-converter-tool:0.3.2
+    dockerPull: polusai/ome-converter-tool:0.3.3-dev1
   EnvVarRequirement:
     envDef:
       HOME: /home/polusai

diff --git a/src/image/workflows/utils.py b/src/image/workflows/utils.py
@@ -14,7 +14,7 @@
 MANIFEST_URLS = {
             "bbbc_download": f"{GITHUB_TAG}/saketprem/polus-plugins/bbbc_download/utils/bbbc-download-plugin/plugin.json",
             "file_renaming": f"{GITHUB_TAG}/hamshkhawar/image-tools/filepattern_filerenaming/formats/file-renaming-tool/plugin.json",
-            "ome_converter": f"{GITHUB_TAG}/PolusAI/image-tools/refs/heads/master/formats/ome-converter-tool/plugin.json",
+            "ome_converter": f"{GITHUB_TAG}/hamshkhawar/image-tools/refs/heads/fix_endian_bug_omeconverter/formats/ome-converter-tool/plugin.json",
             "estimate_flatfield": f"{GITHUB_TAG}/PolusAI/image-tools/refs/heads/master/regression/basic-flatfield-estimation-tool/plugin.json",
             "apply_flatfield": f"{GITHUB_TAG}/PolusAI/image-tools/refs/heads/master/transforms/images/apply-flatfield-tool/plugin.json",
             "kaggle_nuclei_segmentation": f"{GITHUB_TAG}/hamshkhawar/image-tools/refs/heads/kaggle_update_dependencies/segmentation/kaggle-nuclei-segmentation-tool/plugin.json",