Patch/transferfunctions/logistic offset

[jdcpni]

No description provided.

[github-actions]

This PR causes the following changes to the html docs (ubuntu-latest-3.11):

diff -r docs-base/KohonenMechanism.html docs-head/KohonenMechanism.html
405c405
< <dd><p>Determine numberr of items expected by termination_measure</p>
---
> <dd><p>Determine number of items expected by termination_measure and check clip if specified</p>
diff -r docs-base/TimerFunctions.html docs-head/TimerFunctions.html
991c991
< <em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">psyneulink.core.components.functions.nonstateful.timerfunctions.</span></span><span class="sig-name descname"><span class="pre">TimerFunction</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">default_variable</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">params</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">owner</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">prefs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.core.components.functions.nonstateful.timerfunctions.TimerFunction" title="Permalink to this definition">¶</a></dt>
---
> <em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">psyneulink.core.components.functions.nonstateful.timerfunctions.</span></span><span class="sig-name descname"><span class="pre">TimerFunction</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.core.components.functions.nonstateful.timerfunctions.TimerFunction" title="Permalink to this definition">¶</a></dt>
diff -r docs-base/TransferFunctions.html docs-head/TransferFunctions.html
233,239c233,236
< <p>All TransferFunctions have the following attributes:</p>
< <ul class="simple">
< <li><p><strong>bounds</strong>:  specifies the lower and upper limits of the result;  if there are none, the attribute is set to
< <code class="xref any docutils literal notranslate"><span class="pre">None</span></code>;  if it has at least one bound, the attribute is set to a tuple specifying the lower and upper bounds,
< respectively, with <code class="xref any docutils literal notranslate"><span class="pre">None</span></code> as the entry for no bound.</p></li>
< </ul>
< <ul class="simple">
---
> <p>All TransferFunctions have the following attributes: <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.bounds" title="psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.bounds"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">bounds</span></code></a>,
> <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.scale" title="psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.scale"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">scale</span></code></a>, and <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.offset" title="psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.offset"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">offset</span></code></a>. In addition, they have a standardized pair of
> modulable parameters that are aliased to one of their primary parameters:</p>
> <ul class="simple" id="transferfunction-modulable-params">
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< each of these is assigned the name of one of the function’s
< parameters and used by <a class="reference internal" href="ModulatoryProjection.html"><span class="doc">ModulatoryProjections</span></a> to modulate the output of the
< TransferFunction’s function (see <a class="reference internal" href="Functions.html#function-modulatory-params"><span class="std std-ref">Modulatory Parameters</span></a>).</p></li>
---
> each of these is assigned the name of one of the function’s parameters and used by <a class="reference internal" href="ModulatoryProjection.html"><span class="doc">ModulatoryProjections</span></a> to modulate the output of the TransferFunction’s function (see <a class="reference internal" href="Functions.html#function-modulatory-params"><span class="std std-ref">Modulatory Parameters</span></a>).
> By default, <strong>multiplicative_param</strong> is assigned to the function’s <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.scale" title="psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.scale"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">scale</span></code></a> Parameter
> and <strong>additive_param</strong> is assigned to the function’s <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.offset" title="psyneulink.core.components.functions.nonstateful.transferfunctions.TransferFunction.offset"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">offset</span></code></a> Parameter.</p></li>
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< <dd><p>determines the lower and upper limits of the result;  if at least one bound is specified, the attribute is
< a tuple specifying the lower and upper bounds, respectively, with <code class="xref any docutils literal notranslate"><span class="pre">None</span></code> as the entry for no bound.</p>
< <dl class="field-list simple">
---
> <dd><dl class="field-list simple">
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< <dd class="field-odd"><p>Tuple or None</p>
---
> <dd class="field-odd"><p>(0,1)</p>
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< \[scale * \frac{1}{1 + e^{ - gain ( variable + bias - x_{0} ) + offset}}\]</div>
---
> \[scale * \frac{1}{1 + e^{ - gain ( variable + bias - x_{0} )}}  + offset\]</div>
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< accommodate the convention in the machine learning community; <strong>x_0</strong> is included to match the <a class="reference external" href="https://en.wikipedia.org/wiki/Logistic_function">standard
< form of the Logistic Function</a> (in which <strong>gain</strong>
< corresponds to the <em>k</em> parameter and <strong>scale</strong> corresponds to the <em>L</em> parameter); <strong>offset</strong> implements a
< form of bias that is not modulated by gain (i.e., it produces an offset of the function along the horizontal
< axis).</p>
---
> accommodate the convention in the machine learning community; <strong>x_0</strong> is included to match the <a class="reference external" href="https://en.wikipedia.org/wiki/Logistic_function">standard form
> of the Logistic Function</a> (in which <strong>gain</strong> corresponds to
> the <em>k</em> parameter and <strong>scale</strong> corresponds to the <em>L</em> parameter); <strong>offset</strong> implements a translation of the
> function along the vertical axis that is not modulated by gain.</p>
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< <li><p><strong>gain</strong> (<em>float : default 1.0</em>) – specifies value by which to multiply each element of <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">variable</span></code></a> after it is adjusted by
< <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">bias</span></code></a> and/or <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">x_0</span></code></a>, but before adjustment by <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.offset" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.offset"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">offset</span></code></a> and
< logistic transformation (see <a class="reference internal" href="#logistic-note"><span class="std std-ref">note</span></a> above).</p></li>
---
> <li><p><strong>gain</strong> (<em>float : default 1.0</em>) – specifies value by which to multiply each element of <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">variable</span></code></a> after it is
> adjusted by <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">bias</span></code></a> and/or <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">x_0</span></code></a>, but before logistic transformation
> (see <a class="reference internal" href="#logistic-note"><span class="std std-ref">note</span></a> above).</p></li>
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< <li><p><strong>offset</strong> (<em>float : default 0.0</em>) – specifies value to add to each element of <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">variable</span></code></a> after adjusting by <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">bias</span></code></a> and/or <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">x_0</span></code></a> and applying <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.gain" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.gain"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">gain</span></code></a>, but before logistic
< transformation (see <a class="reference internal" href="#logistic-note"><span class="std std-ref">note</span></a> above).</p></li>
< <li><p><strong>scale</strong> (<em>float : default 0.0</em>) – specifies value by which to multiply each element of <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">variable</span></code></a> after all other parameters
< and logistic transformation have been applied (see <a class="reference internal" href="#logistic-note"><span class="std std-ref">note</span></a> above).</p></li>
---
> <li><p><strong>offset</strong> (<em>float : default 0.0</em>) – specifies value to add to each element of <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">variable</span></code></a> after logistic  transformation and
> <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.scale" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.scale"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">scale</span></code></a> have been applied (see <a class="reference internal" href="#logistic-note"><span class="std std-ref">note</span></a> above).</p></li>
> <li><p><strong>scale</strong> (<em>float : default 0.0</em>) – specifies value value by which to multiply each element of <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">variable</span></code></a> after logistic
> transformation but before <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.offset" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.offset"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">offset</span></code></a> has been applied (see <a class="reference internal" href="#logistic-note"><span class="std std-ref">note</span></a> above).</p></li>
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< <dd><p>value by which to multiply each element of <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.variable"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">variable</span></code></a> after it is adjusted by <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.bias"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">bias</span></code></a> and/or <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.x_0"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">x_0</span></code></a>, but before adjustment by <a class="reference internal" href="#psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.offset" title="psyneulink.core.components.functions.nonstateful.transferfunctions.Logistic.offset"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">offset</span></code></a> and
< logistic transformation (see <a class="reference internal" href="#logistic-note"><span class="std std-ref">note</span></a> above
...

See CI logs for the full diff.

[github-actions]

This PR causes the following changes to the html docs (ubuntu-latest-3.11):

diff -r docs-base/Component.html docs-head/Component.html
522c522
< <li><p><strong>execute_until_finished</strong> – determines whether the Component executes until its <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method returns True.
---
> <li><p><strong>execute_until_finished</strong> – determines whether the Component executes until its <a class="reference internal" href="#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method returns True.
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< irrespective of its <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method;  if it is True then, depending on how its class implements and handles its
< <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method, the Component may execute more than once per call to its <a class="reference internal" href="#psyneulink.core.components.component.Component.execute" title="psyneulink.core.components.component.Component.execute"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">execute</span></code></a> method.</p></li>
---
> irrespective of its <a class="reference internal" href="#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method;  if it is True then, depending on how its class implements and handles its
> <a class="reference internal" href="#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method, the Component may execute more than once per call to its <a class="reference internal" href="#psyneulink.core.components.component.Component.execute" title="psyneulink.core.components.component.Component.execute"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">execute</span></code></a> method.</p></li>
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< <a class="reference internal" href="#psyneulink.core.components.component.Component.execute" title="psyneulink.core.components.component.Component.execute"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">execute</span></code></a> method, or extend over several calls.  It is set to 0 each time <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> evaluates
---
> <a class="reference internal" href="#psyneulink.core.components.component.Component.execute" title="psyneulink.core.components.component.Component.execute"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">execute</span></code></a> method, or extend over several calls.  It is set to 0 each time <a class="reference internal" href="#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> evaluates
diff -r docs-base/Condition.html docs-head/Condition.html
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< satisfied when the <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method of the specified node,       given <a class="reference internal" href="Context.html#psyneulink.core.globals.context.Context.execution_id" title="psyneulink.core.globals.context.Context.execution_id"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">execution_id</span></code></a> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
---
> satisfied when the <a class="reference internal" href="Component.html#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method of the specified node,       given <a class="reference internal" href="Context.html#psyneulink.core.globals.context.Context.execution_id" title="psyneulink.core.globals.context.Context.execution_id"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">execution_id</span></code></a> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
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< satisfied when the <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method of any of the specified       nodes, given <a class="reference internal" href="Context.html#psyneulink.core.globals.context.Context.execution_id" title="psyneulink.core.globals.context.Context.execution_id"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">execution_id</span></code></a> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
---
> satisfied when the <a class="reference internal" href="Component.html#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method of any of the specified       nodes, given <a class="reference internal" href="Context.html#psyneulink.core.globals.context.Context.execution_id" title="psyneulink.core.globals.context.Context.execution_id"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">execution_id</span></code></a> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
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< satisfied when the <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method of all of the specified       nodes, given <a class="reference internal" href="Context.html#psyneulink.core.globals.context.Context.execution_id" title="psyneulink.core.globals.context.Context.execution_id"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">execution_id</span></code></a> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
---
> satisfied when the <a class="reference internal" href="Component.html#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> method of all of the specified       nodes, given <a class="reference internal" href="Context.html#psyneulink.core.globals.context.Context.execution_id" title="psyneulink.core.globals.context.Context.execution_id"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">execution_id</span></code></a> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
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< <li><p>the <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> methods of the node specified in <strong>dependencies</strong> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
---
> <li><p>the <a class="reference internal" href="Component.html#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> methods of the node specified in <strong>dependencies</strong> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
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< <li><p>the <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> methods of all nodes specified in <strong>dependencies</strong> return <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
---
> <li><p>the <a class="reference internal" href="Component.html#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> methods of all nodes specified in <strong>dependencies</strong> return <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
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< <li><p>the <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> methods of any nodes specified in <strong>dependencies</strong> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
---
> <li><p>the <a class="reference internal" href="Component.html#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> methods of any nodes specified in <strong>dependencies</strong> returns <code class="xref any docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
diff -r docs-base/KohonenMechanism.html docs-head/KohonenMechanism.html
405c405
< <dd><p>Determine numberr of items expected by termination_measure</p>
---
> <dd><p>Determine number of items expected by termination_measure and check clip if specified</p>
diff -r docs-base/LCAMechanism.html docs-head/LCAMechanism.html
345c345
< <li><p><strong>threshold</strong> (<em>float</em><em> or </em><em>None : default None</em>) – specifes the value at which the Mechanism’s <a class="reference internal" href="DDM.html#psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished" title="psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> attribute is set to True
---
> <li><p><strong>threshold</strong> (<em>float</em><em> or </em><em>None : default None</em>) – specifes the value at which the Mechanism’s <a class="reference internal" href="Component.html#psyneulink.core.components.component.Component.is_finished" title="psyneulink.core.components.component.Component.is_finished"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">is_finished</span></code></a> attribute is set to True
diff -r docs-base/LearningFunctions.html docs-head/LearningFunctions.html
1549c1549
< error_matrix passed in the <a class="reference internal" href="DistributionFunctions.html#psyneulink.core.components.functions.distributionfunctions.ExponentialDist.params" title="psyneulink.core.components.functions.distributionfunctions.ExponentialDist.params"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">params</span></code></a> argument.</p>
---
> error_matrix passed in the <a class="reference internal" href="AutodiffComposition.html#psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper.params" title="psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper.params"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">params</span></code></a> argument.</p>
diff -r docs-base/RefactoredLearningGuide.html docs-head/RefactoredLearningGuide.html
282c282
< <p>Notice that we no longer have to extract the target node from the <code class="xref any docutils literal notranslate"><span class="pre">add_backpropagation_learning_pathway</span> <span class="pre">method</span></code>, and can instead pass the targets as output nodes mapped to values, in a new parameter called <code class="xref any docutils literal notranslate"><span class="pre">targets</span></code> in the <a class="reference internal" href="EMComposition.html#psyneulink.library.compositions.emcomposition.EMComposition.learn" title="psyneulink.library.compositions.emcomposition.EMComposition.learn"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">learn</span></code></a> method.</p>
---
> <p>Notice that we no longer have to extract the target node from the <code class="xref any docutils literal notranslate"><span class="pre">add_backpropagation_learning_pathway</span> <span class="pre">method</span></code>, and can instead pass the targets as output nodes mapped to values, in a new parameter called <code class="xref any docutils literal notranslate"><span class="pre">targets</span></code> in the <a class="reference internal" href="AutodiffComposition.html#psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.learn" title="psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.learn"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">learn</span></code></a> method.</p>
287c287
< its constructor to be runtime parameters of its <a class="reference internal" href="EMComposition.html#psyneulink.library.compositions.emcomposition.EMComposition.learn" title="psyneulink.library.compositions.emcomposition.EMComposition.learn"><code class="xref any py py-meth docutils literal notranslate"><span class="pre">learn</span></code></a> method.</p>
---
> its constructor to be runtime parameters of its <a class="reference internal" href="AutodiffComposition.html#psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.learn" title="psyneulin
...

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