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Signed-off-by: YunLiu <[email protected]>
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@KumoLiu
KumoLiu committed Mar 20, 2024
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203 changes: 2 additions & 201 deletions pathology/tumor_detection/ignite/profiling_camelyon_pipeline.ipynb
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},
{
"cell_type": "code",
"execution_count": 4,
"execution_count": null,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"{'root': './', 'train_file': './training.csv', 'valid_file': './training.csv', 'logdir': './logs/', 'region_size': 768, 'grid_shape': 3, 'patch_size': 224, 'batch_size': 10, 'n_epochs': 10, 'lr': 0.001, 'use_openslide': False, 'amp': True, 'novograd': True, 'pretrain': False, 'num_workers': 0, 'gpu': '0'}\n",
"Logs and model are saved at './logs/240320-141645_resnet18_ps224_bs10_ep10_lr0.001'.\n",
"CUDA is being used with GPU Id(s): 0\n",
"image: \n",
" shape torch.Size([90, 3, 224, 224])\n",
" type: <class 'monai.data.meta_tensor.MetaTensor'>\n",
" dtype: torch.float32\n",
"labels: \n",
" shape torch.Size([90, 1, 1, 1])\n",
" type: <class 'monai.data.meta_tensor.MetaTensor'>\n",
" dtype: torch.float32\n",
"batch size: 10\n",
"train number of batches: 300\n",
"valid number of batches: 300\n",
"INFO:ignite.engine.engine.SupervisedTrainer:Engine run resuming from iteration 0, epoch 0 until 10 epochs\n",
"2024-03-20 14:16:46,951 - INFO - Epoch: 1/10, Iter: 1/300 -- train_loss: 0.6897 \n",
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"Generating '/tmp/nsys-report-bac5.qdstrm'\n",
"[1/1] [========================100%] profile_report.nsys-rep\n",
"Generated:\n",
" /workspace/Code/tutorials/pathology/tumor_detection/ignite/profile_report.nsys-rep\n"
]
}
],
"outputs": [],
"source": [
"!nsys profile \\\n",
" --trace nvtx,osrt,cudnn,cuda, \\\n",
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