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diff --git a/README.html b/README.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>(Replace_with_your_title) Cookbook &#8212; Project Pythia Cookbook Template</title>
+    <title>Ocean Biogeochemistry Cookbook &#8212; Project Pythia Cookbook Template</title>
 
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
@@ -181,7 +181,7 @@
         <ul class="nav bd-sidenav">
  <li class="toctree-l1 current">
   <a class="reference internal" href="#">
-   (Replace_with_your_title) Cookbook
+   Ocean Biogeochemistry Cookbook
   </a>
  </li>
 </ul>
@@ -199,19 +199,60 @@
 </ul>
 <p aria-level="2" class="caption" role="heading">
  <span class="caption-text">
-  Introduction
+  Global BGC Metrics and Tracers
  </span>
 </p>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
-  <a class="reference internal" href="notebooks/notebook-template.html">
-   Project Pythia Notebook Template
+  <a class="reference internal" href="notebooks/ocn-global-bgc-metrics.html">
+   Global BGC metrics
+  </a>
+ </li>
+ <li class="toctree-l1">
+  <a class="reference internal" href="notebooks/ocn-tracer-views.html">
+   Quick look at a variable
+  </a>
+ </li>
+</ul>
+<p aria-level="2" class="caption" role="heading">
+ <span class="caption-text">
+  Carbon
+ </span>
+</p>
+<ul class="nav bd-sidenav">
+ <li class="toctree-l1">
+  <a class="reference internal" href="notebooks/ocn-carbonfluxes.html">
+   Carbon fluxes
+  </a>
+ </li>
+</ul>
+<p aria-level="2" class="caption" role="heading">
+ <span class="caption-text">
+  Phytoplankton
+ </span>
+</p>
+<ul class="nav bd-sidenav">
+ <li class="toctree-l1">
+  <a class="reference internal" href="notebooks/ocn-phyto-biomass.html">
+   Phytoplankton biomass
+  </a>
+ </li>
+</ul>
+<p aria-level="2" class="caption" role="heading">
+ <span class="caption-text">
+  Zooplankton
+ </span>
+</p>
+<ul class="nav bd-sidenav">
+ <li class="toctree-l1">
+  <a class="reference internal" href="notebooks/ocn-zoo.html">
+   Zooplankton biomass
   </a>
  </li>
 </ul>
 <p aria-level="2" class="caption" role="heading">
  <span class="caption-text">
-  Analyzing ocean biogeochemistry data
+  Comparing to Observational Data
  </span>
 </p>
 <ul class="nav bd-sidenav">
@@ -374,19 +415,19 @@
               <div>
 
   <a class="reference internal image-reference" href="_images/thumbnail.png"><img alt="thumbnail" src="_images/thumbnail.png" style="width: 300px;" /></a>
-<div class="tex2jax_ignore mathjax_ignore section" id="replace-with-your-title-cookbook">
-<h1>(Replace_with_your_title) Cookbook<a class="headerlink" href="#replace-with-your-title-cookbook" title="Permalink to this headline"><i class="fas fa-link"></i></a></h1>
+<div class="tex2jax_ignore mathjax_ignore section" id="ocean-biogeochemistry-cookbook">
+<h1>Ocean Biogeochemistry Cookbook<a class="headerlink" href="#ocean-biogeochemistry-cookbook" title="Permalink to this headline"><i class="fas fa-link"></i></a></h1>
 <p><a class="reference external" href="https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml"><img alt="nightly-build" src="https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml/badge.svg" /></a>
 <a class="reference external" href="https://binder.projectpythia.org/v2/gh/ProjectPythia/cookbook-template/main?labpath=notebooks"><img alt="Binder" src="https://binder.projectpythia.org/badge_logo.svg" /></a>
 <a class="reference external" href="https://zenodo.org/badge/latestdoi/475509405"><img alt="DOI" src="https://zenodo.org/badge/475509405.svg" /></a></p>
-<p>This Project Pythia Cookbook covers … (replace <code class="docutils literal notranslate"><span class="pre">...</span></code> with the main subject of your cookbook … e.g., <em>working with radar data in Python</em>)</p>
+<p>This Project Pythia Cookbook covers working with various sources of ocean biogeochemistry data, including Community Earth System Model (CESM) output and observational data.</p>
 <div class="section" id="motivation">
 <h2>Motivation<a class="headerlink" href="#motivation" title="Permalink to this headline"><i class="fas fa-link"></i></a></h2>
 <p>(Add a few sentences stating why this cookbook will be useful. What skills will you, “the chef”, gain once you have reached the end of the cookbook?)</p>
 </div>
 <div class="section" id="authors">
 <h2>Authors<a class="headerlink" href="#authors" title="Permalink to this headline"><i class="fas fa-link"></i></a></h2>
-<p><span class="xref myst">First Author</span>, <span class="xref myst">Second Author</span>, etc. <em>Acknowledge primary content authors here</em></p>
+<p><a class="reference external" href="https://github.com/rmshkv">Lev Romashkov</a>, <a class="reference external" href="https://github.com/kristenkrumhardt">Kristen Krumhardt</a></p>
 <div class="section" id="contributors">
 <h3>Contributors<a class="headerlink" href="#contributors" title="Permalink to this headline"><i class="fas fa-link"></i></a></h3>
 <a href="https://github.com/ProjectPythia/cookbook-template/graphs/contributors">
@@ -429,21 +470,20 @@ <h3>Running on Binder<a class="headerlink" href="#running-on-binder" title="Perm
 <div class="section" id="running-on-your-own-machine">
 <h3>Running on Your Own Machine<a class="headerlink" href="#running-on-your-own-machine" title="Permalink to this headline"><i class="fas fa-link"></i></a></h3>
 <p>If you are interested in running this material locally on your computer, you will need to follow this workflow:</p>
-<p>(Replace “cookbook-example” with the title of your cookbooks)</p>
 <ol class="arabic">
-<li><p>Clone the <code class="docutils literal notranslate"><span class="pre">https://github.com/ProjectPythia/cookbook-example</span></code> repository:</p>
+<li><p>Clone the <code class="docutils literal notranslate"><span class="pre">https://github.com/ProjectPythia/ocean-bgc-cookbook</span></code> repository:</p>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="w"> </span>git<span class="w"> </span>clone<span class="w"> </span>https://github.com/ProjectPythia/cookbook-example.git
 </pre></div>
 </div>
 </li>
-<li><p>Move into the <code class="docutils literal notranslate"><span class="pre">cookbook-example</span></code> directory</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span><span class="w"> </span>cookbook-example
+<li><p>Move into the <code class="docutils literal notranslate"><span class="pre">ocean-bgc-cookbook</span></code> directory</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span><span class="w"> </span>ocean-bgc-cookbook
 </pre></div>
 </div>
 </li>
 <li><p>Create and activate your conda environment from the <code class="docutils literal notranslate"><span class="pre">environment.yml</span></code> file</p>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>conda<span class="w"> </span>env<span class="w"> </span>create<span class="w"> </span>-f<span class="w"> </span>environment.yml
-conda<span class="w"> </span>activate<span class="w"> </span>cookbook-example
+conda<span class="w"> </span>activate<span class="w"> </span>ocean-bgc-cookbook-dev
 </pre></div>
 </div>
 </li>
@@ -462,6 +502,12 @@ <h3>Running on Your Own Machine<a class="headerlink" href="#running-on-your-own-
 </div>
 <div class="toctree-wrapper compound">
 </div>
+<div class="toctree-wrapper compound">
+</div>
+<div class="toctree-wrapper compound">
+</div>
+<div class="toctree-wrapper compound">
+</div>
 </div>
 
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diff --git a/_sources/README.md b/_sources/README.md
@@ -1,20 +1,20 @@
 <img src="thumbnail.png" alt="thumbnail" width="300"/>
 
-# (Replace_with_your_title) Cookbook
+# Ocean Biogeochemistry Cookbook
 
 [![nightly-build](https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml/badge.svg)](https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml)
 [![Binder](https://binder.projectpythia.org/badge_logo.svg)](https://binder.projectpythia.org/v2/gh/ProjectPythia/cookbook-template/main?labpath=notebooks)
 [![DOI](https://zenodo.org/badge/475509405.svg)](https://zenodo.org/badge/latestdoi/475509405)
 
-This Project Pythia Cookbook covers ... (replace `...` with the main subject of your cookbook ... e.g., _working with radar data in Python_)
+This Project Pythia Cookbook covers working with various sources of ocean biogeochemistry data, including Community Earth System Model (CESM) output and observational data.
 
 ## Motivation
 
 (Add a few sentences stating why this cookbook will be useful. What skills will you, "the chef", gain once you have reached the end of the cookbook?)
 
 ## Authors
 
-[First Author](@first-author), [Second Author](@second-author), etc. _Acknowledge primary content authors here_
+[Lev Romashkov](https://github.com/rmshkv), [Kristen Krumhardt](https://github.com/kristenkrumhardt)
 
 ### Contributors
 
@@ -59,22 +59,20 @@ Jupyter](https://foundations.projectpythia.org/foundations/getting-started-jupyt
 
 If you are interested in running this material locally on your computer, you will need to follow this workflow:
 
-(Replace "cookbook-example" with the title of your cookbooks)
-
-1. Clone the `https://github.com/ProjectPythia/cookbook-example` repository:
+1. Clone the `https://github.com/ProjectPythia/ocean-bgc-cookbook` repository:
 
    ```bash
     git clone https://github.com/ProjectPythia/cookbook-example.git
    ```
 
-1. Move into the `cookbook-example` directory
+1. Move into the `ocean-bgc-cookbook` directory
    ```bash
-   cd cookbook-example
+   cd ocean-bgc-cookbook
    ```
 1. Create and activate your conda environment from the `environment.yml` file
    ```bash
    conda env create -f environment.yml
-   conda activate cookbook-example
+   conda activate ocean-bgc-cookbook-dev
    ```
 1. Move into the `notebooks` directory and start up Jupyterlab
    ```bash