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* Begin refactoring code for computing site metrics * Move functions to single file * Add file * Enabled site metric download * Remove print statements * Add some columns, adjust some formatting * Add some columns, adjust some formatting * Add warning before downloading * Adjust text
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,145 @@ | ||
| import React, { useState, useEffect } from 'react' | ||
| import axios from 'axios' | ||
| import { | ||
| Button, Checkbox, Divider, Fade, FormControlLabel, FormGroup, Paper, Popper, Tooltip, Typography, | ||
| } from '@material-ui/core' | ||
| import api from '../../Api' | ||
| import { DownloadIcon } from '../Icons/Download' | ||
| import { Warning as WarningIcon } from '@material-ui/icons'; | ||
| import { useStore } from '../../contexts' | ||
| import { CSVLink } from 'react-csv' | ||
| import { convertEnrollmentData, computeMetrics } from '../../utils/sites' | ||
|
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| // | ||
|
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| const columns = [ | ||
| { label: 'Proposal ID', key: 'ProposalID' }, | ||
| { label: 'Proposal Name', key: 'ProposalTitle' }, | ||
| { label: 'Protocol (Short Description)', key: 'ProposalDescription' }, | ||
| { label: 'CTSA Name', key: 'ctsaName' }, | ||
| { label: 'Site ID', key: 'siteId' }, | ||
| { label: 'CTSA ID', key: 'ctsaId' }, | ||
| { label: 'Site name', key: 'siteName' }, | ||
| { label: 'Site Number', key: 'siteNumber' }, | ||
| { label: 'PI', key: 'principalInvestigator' }, | ||
| { label: 'Date Protocol Sent', key: 'dateRegPacketSent' }, | ||
| { label: 'Contract Sent', key: 'dateContractSent' }, | ||
| { label: 'IRB Submission', key: 'dateIrbSubmission' }, | ||
| { label: 'IRB Approval', key: 'dateIrbApproval' }, | ||
| { label: 'ContractExecution', key: 'dateContractExecution' }, | ||
| { label: 'Site Activation', key: 'dateSiteActivated' }, | ||
| { label: 'FPFV', key: 'fpfv' }, | ||
| { label: 'LPFV', key: 'lpfv' }, | ||
| { label: 'Enrollment', key: 'enrollment'}, | ||
| { label: 'Patients Consented', key: 'patientsConsentedCount'}, | ||
| { label: 'Patients Enrolled', key: 'patientsEnrolledCount'}, | ||
| { label: 'Patients Withdrawn', key: 'patientsWithdrawnCount'}, | ||
| { label: 'Patients Expected', key: 'patientsExpectedCount'}, | ||
| { label: 'Protocol Deviations', key: 'protocolDeviationsCount'}, | ||
| { label: 'Lost to Follow Up', key: 'lostToFollowUp'}, | ||
| { label: 'Protocol to FPFV', key: 'protocolToFpfv' }, | ||
| { label: 'Contract Execution Time', key: 'contractExecutionTime' }, | ||
| { label: 'sIRB Approval Time', key: 'sirbApprovalTime' }, | ||
| { label: 'Site Open to FPFV', key: 'siteOpenToFpfv' }, | ||
| { label: 'Site Open to LPFV', key: 'siteOpenToLpfv' }, | ||
| { label: 'Percent of consented patients randomized', key: 'percentConsentedPtsRandomized' }, | ||
| { label: 'Actual to expected randomized patient ratio', key: 'actualToExpectedRandomizedPtRatio' }, | ||
| { label: 'Ratio of randomized patients that dropped out of the study', key: 'ratioRandomizedPtsDropout' }, | ||
| { label: 'Major protocol deviations per randomized patient', key: 'majorProtocolDeviationsPerRandomizedPt' }, | ||
| { label: 'Number of Queries', key: 'queriesCount' }, | ||
| { label: 'Queries per patient', key: 'queriesPerConsentedPatient' }, | ||
| ]; | ||
|
|
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| export const SiteMetricsDownload = () => { | ||
| const [{ proposals }] = useStore() | ||
| const [sites, setSites] = useState([]) | ||
| const [popperAnchor, setPopperAnchor] = useState(null) | ||
| const [open, setOpen] = useState(false) | ||
|
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| useEffect(() => { | ||
| const getSites = async () => { | ||
| try { | ||
| const sites = [] | ||
| for (const proposal of proposals) { | ||
| const response = await axios.get(api.studySitesByProposalId(proposal.proposalID)) | ||
|
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| const proposalSites = response.data | ||
|
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| proposalSites.forEach(site => { | ||
| convertEnrollmentData(site) | ||
| computeMetrics(site) | ||
|
|
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| site.ProposalTitle = proposal.shortTitle | ||
| site.ProposalDescription = proposal.shortDescription | ||
| }); | ||
|
|
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| sites.push(...proposalSites) | ||
| } | ||
|
|
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| setSites(sites) | ||
| } | ||
| catch (error) { | ||
| console.log(error) | ||
| } | ||
| }; | ||
|
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| getSites(); | ||
| }, [proposals]) | ||
|
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| const onClickOpen = event => { | ||
| setPopperAnchor(event.currentTarget) | ||
| setOpen(prevOpen => !prevOpen) | ||
| } | ||
|
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| return ( | ||
| <> | ||
| <Tooltip title='Download site metrics' aria-label='Download site metrics'> | ||
| <Button | ||
| variant='outlined' | ||
| startIcon={ <DownloadIcon /> } | ||
| onClick={ onClickOpen } | ||
| >Site Metrics</Button> | ||
| </Tooltip> | ||
| <Popper | ||
| open={ open } | ||
| anchorEl={ popperAnchor } | ||
| placement='bottom' | ||
| transition | ||
| style={{ zIndex: 99 }} | ||
| > | ||
| { | ||
| ({ TransitionProps }) => ( | ||
| <Fade { ...TransitionProps } timeout={ 350 }> | ||
| <Paper style={{ width: '200px', | ||
| display: 'flex', | ||
| flexDirection: 'column', }}> | ||
| <Typography | ||
| variant='h6' | ||
| style={{ padding: '0.5rem 1rem' }} | ||
| > | ||
| Site Metrics Download | ||
| </Typography> | ||
|
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| <Divider /> | ||
|
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| <div style={{ padding: '0.5rem', display: 'flex', gap: '0.5rem' }}> | ||
| <div><WarningIcon /></div> | ||
| <div>After you click the DOWNLOAD button wait for the file to finish downloading before opening, or data may be missing.</div> | ||
| </div> | ||
|
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| <Divider /> | ||
|
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| <Button | ||
| component={ CSVLink } | ||
| headers={ columns } | ||
| data={ sites } | ||
| filename='site-metrics' | ||
| >Download</Button> | ||
| </Paper> | ||
| </Fade> | ||
| ) | ||
| } | ||
| </Popper> | ||
| </> | ||
| ) | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,2 @@ | ||
| export * from './isSiteActive' | ||
| export * from './siteMetrics' |
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