ENH: Add Scipy and Cupy as fft interfaces#8

Draft

PinkShnack wants to merge 31 commits intomainfrom cupy_gpu_fft_backend

+1,163-135

Commits on Aug 26, 2024

enh: add scipy fft interface
Eoghan O'Connell
committed
tests: correct path for ci use
Eoghan O'Connell
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tests: fft interface checks and lint code
Eoghan O'Connell
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docs: update docstrings and docs example output image
Eoghan O'Connell
committed

Commits on Sep 17, 2024

enh, tests: add cupy3D class and basic tests for debugging
Eoghan O'Connell
committed

Commits on Sep 18, 2024

enh: making the code 3d-proof
Eoghan O'Connell
committed

Commits on Nov 7, 2024

test: compare 2D and 3D mean value consistency
Eoghan O'Connell
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enh: allow fourier base to subtract mean from 3D data arrays
Eoghan O'Connell
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enh: create utility functions for padding and subt_mean
Eoghan O'Connell
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tests: add tests for new util funcs and comparing 2D and 3D Fourier processing
Eoghan O'Connell
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tests: remove use of matplotlib from tests
Eoghan O'Connell
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docs: create speed comparison example for Cupy 3d
Eoghan O'Connell
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Commits on Nov 8, 2024

test: reorg the cupy tests for clarity
Eoghan O'Connell
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ci: ignore cupy tests for now during the cicd pipeline
Eoghan O'Connell
committed
docs: update figure labels; ci: correct github actions syntax
Eoghan O'Connell
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fix: correct define FFTFilters upon import
Eoghan O'Connell
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test: check ci tests to see if Pyfftw is the issue
Eoghan O'Connell
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docs: lint examples
Eoghan O'Connell
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docs: update README
Eoghan O'Connell
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ref: use negative indexing for np array shape
Eoghan O'Connell
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enh: add use of 3D array for the FFTFilter init, not incl padding
Eoghan O'Connell
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enh: ensure ifft with padding works with 3D stack
Eoghan O'Connell
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Commits on Nov 20, 2024

enh: ensure all data is converted to 3D image stack
Eoghan O'Connell
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enh: add data format conversion functions
Eoghan O'Connell
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ref: use the data format conversion convenience fnuctions to handle fft data input
Eoghan O'Connell
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test: refactor relevant oah tests to expect new format and shape
Eoghan O'Connell
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enh: add rgb warning for user
Eoghan O'Connell
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test: ensure the users provided data format is returned
Eoghan O'Connell
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enh: add 3d array usage to qsli
Eoghan O'Connell
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Commits on Nov 21, 2024

ref: align the 2d qlsi code to 3d
Eoghan O'Connell
committed

Commits on Dec 5, 2024

fix: match qlsi 2d with new 3d implementation
Eoghan O'Connell
committed