GNCList objects are now subsettable

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicRanges@102948 bc3139a8-67e5-0310-9ffc-ced21a209358
RamsinghLab · Apr 22, 2015 · 5622203 · 5622203
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -7,7 +7,7 @@ Description: The ability to efficiently represent and manipulate genomic
 	intervals. Specialized containers for representing and manipulating
 	short alignments against a reference genome are defined in the
 	GenomicAlignments package.
-Version: 1.21.1
+Version: 1.21.2
 Author: P. Aboyoun, H. Pages and M. Lawrence
 Maintainer: Bioconductor Package Maintainer <[email protected]>
 biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,

diff --git a/R/GNCList-class.R b/R/GNCList-class.R
@@ -80,6 +80,15 @@ GNCList <- function(x)
 setAs("GenomicRanges", "GNCList", function(from) GNCList(from))
 
 
+### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+### Subsetting
+###
+
+setMethod("extractROWS", "GNCList",
+    function(x, i) as(callGeneric(as(x, "GRanges"), i), class(x))
+)
+
+
 ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 ### findOverlaps_GNCList()
 ###