Merge pull request #3 from STOmics/feature/matrix_script #79

	name: CellBin Main Test

	on:
	push:
	branches:
	- main

	jobs:
	build:
	runs-on: self-hosted
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Demo test
	run: \|
	echo $CONDA_PREFIX/bin >> $GITHUB_PATH
	conda init bash
	source ~/.bashrc
	if conda info --envs \| grep -q "myenv"; then
	echo "Environment 'myenv' already exists. Skipping creation."
	else
	echo "Environment 'myenv' does not exist. Creating."
	conda create --name myenv python=3.8 -y
	fi
	conda activate myenv
	which python
	python -c "print('Hello, World!')"
	pip install pytest
	pip install pytest-html
	pytest test/test_cellbin_pipeline.py --html=/media/Data1/user/dengzhonghan/data/cellbin2/auto_test_report/${GITHUB_SHA}.html --self-contained-html
	python /media/Data1/user/dengzhonghan/code/email_send/send_email.py \
	-s 'CellBin Research Group' \
	-t 'GitHub Auto Test Report' \
	-r [email protected] \
	-a /media/Data1/user/dengzhonghan/data/cellbin2/auto_test_report/${GITHUB_SHA}.html \
	-m 'CellBin report'

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