Test PR

.github/workflows/static-checks.yml

@@ -15,22 +15,32 @@ permissions:
 jobs:
   linter:
     runs-on: ubuntu-latest
+    timeout-minutes: 20
     steps:
       - name: Checkout PR
         uses: actions/checkout@v4
       - name: Mount cvmfs
         uses: cvmfs-contrib/github-action-cvmfs@v3
-      - name: Gather paths of needed headers
-        shell: bash
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+      - name: Generate compilation database
+        working-directory: ./SDL
         run: |
-          source setup.sh
+          pip install compiledb compdb
+          make BACKEND=cpu -Bnwk > build_log.txt
+          compiledb < build_log.txt
+          # This extra step is needed to generate compilation commands for headers
+          compdb list > compile_commands_new.json
+          mv compile_commands_new.json > compile_commands.json
+          # Now we gather some include paths since the compiler is not fully configured to find all the headers.
+          source setup.sh 1> /dev/null 2> /dev/null
           INCLUDE_FLAGS="-I$TRACKLOOPERDIR -I$BOOST_ROOT/include -I$ALPAKA_ROOT/include -I$CUDA_HOME/include -I$ROOT_ROOT/include -I$CMSSW_BASE/src"
           INCLUDE_FLAGS="$INCLUDE_FLAGS -I/cvmfs/cms.cern.ch/el8_amd64_gcc11/external/gcc/11.4.1-30ebdc301ebd200f2ae0e3d880258e65/include/c++/11.4.1"
           INCLUDE_FLAGS="$INCLUDE_FLAGS -I/cvmfs/cms.cern.ch/el8_amd64_gcc11/external/gcc/11.4.1-30ebdc301ebd200f2ae0e3d880258e65/include/c++/11.4.1/x86_64-redhat-linux-gnu/"
           INCLUDE_FLAGS="$INCLUDE_FLAGS -I/cvmfs/cms.cern.ch/el8_amd64_gcc11/external/gcc/11.4.1-30ebdc301ebd200f2ae0e3d880258e65/lib/gcc/x86_64-redhat-linux-gnu/11.4.1/include"
           echo "include-flags=$INCLUDE_FLAGS" >> $GITHUB_ENV
-          # Note: Ideally we would use compiledb to generate a compile_commands.json file, but I couldn't get it to work properly with clang-tidy.
-          # This alternative of simply passing some extra arguments to clang-tidy seems to work fine (at least for now).
       - name: Run linter
         uses: cpp-linter/cpp-linter-action@v2
         id: linter
@@ -43,7 +53,7 @@ jobs:
           tidy-checks: ''
           lines-changed-only: true
           ignore: .github|bin|code|data|efficiency
-          extra-args: '-ferror-limit=0 -std=c++17 -DALPAKA_ACC_CPU_B_SEQ_T_SEQ_ENABLED ${{ env.include-flags }}'
+          extra-args: '-ferror-limit=0 ${{ env.include-flags }}'
       - name: Fail job if there were checks that failed
         if: steps.linter.outputs.checks-failed > 0
-        run: exit 1
+        run: exit 1

.github/workflows/testing.yml

@@ -5,7 +5,7 @@ on:
     types: [created]
 
 concurrency:
-  group: ${{ github.workflow }}-${{ github.event.issue.number }}
+  group: ${{ github.workflow }}-${{ github.event.issue.number }}-${{ contains(github.event.comment.body, '/run standalone') }}-${{ contains(github.event.comment.body, '/run cmssw') }}
   cancel-in-progress: true
 
 permissions:
@@ -17,16 +17,38 @@ jobs:
     if: >
       github.event.issue.pull_request &&
       contains(github.event.comment.body, '/run standalone') &&
-      (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'CONTRIBUTOR')
+      github.event.comment.user.login == 'ariostas'
     runs-on: ubuntu-latest
     steps:
-      - name: Checkout PR
+      - name: Check out PR
         uses: actions/checkout@v4
         with:
           ref: refs/pull/${{ github.event.issue.number }}/head
+      - name: Get commit SHA
+        run: |
+          sha=$(git rev-parse HEAD)
+          echo "COMMIT_SHA=$sha" >> $GITHUB_ENV
+      - name: Create App Token
+        uses: actions/create-github-app-token@v1
+        id: app-token
+        with:
+          app-id: ${{ secrets.APP_ID }}
+          private-key: ${{ secrets.APP_PRIVATE_KEY }}
+          skip-token-revoke: true
+      - name: Create in progress check
+        uses: LouisBrunner/[email protected]
+        with:
+          token: ${{ steps.app-token.outputs.token }}
+          sha: ${{ env.COMMIT_SHA }}
+          name: Run Standalone PU200
+          status: in_progress
+          details_url: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}
+          output: |
+            {"title": "This check has started...", "summary": "The logs can be found [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }})."}
       - name: Build and run PR
+        timeout-minutes: 60
         id: build-and-run
-        uses: SegmentLinking/TrackLooper-actions/standalone@v1
+        uses: SegmentLinkingTests/TrackLooper-actions/standalone@v1
         with:
           pr-number: ${{ github.event.issue.number }}
       - name: Upload plots to archival repo
@@ -56,20 +78,59 @@ jobs:
               issue_number: context.issue.number,
               owner: context.repo.owner,
               repo: context.repo.repo,
-              body: `There was a problem while building and running in standalone mode. You can find a log of the job [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}).`
+              body: `There was a problem while building and running in standalone mode. The logs can be found [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}).`
             })
+      - name: Create App Token
+        if: always()
+        uses: actions/create-github-app-token@v1
+        id: app-token-end
+        with:
+          app-id: ${{ secrets.APP_ID }}
+          private-key: ${{ secrets.APP_PRIVATE_KEY }}
+      - name: Create completed check
+        uses: LouisBrunner/[email protected]
+        if: always()
+        with:
+          token: ${{ steps.app-token-end.outputs.token }}
+          sha: ${{ env.COMMIT_SHA }}
+          name: Run Standalone PU200
+          conclusion: ${{ job.status }}
+          details_url: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}
+          output: |
+            {"title": "Status: ${{ job.status }}", "summary": "The logs can be found [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }})."}
 
   cmssw:
     if: >
       github.event.issue.pull_request && 
       contains(github.event.comment.body, '/run cmssw') &&
-      (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'CONTRIBUTOR')
+      github.event.comment.user.login == 'ariostas'
     runs-on: ubuntu-latest
     steps:
       - name: Checkout PR
         uses: actions/checkout@v4
         with:
           ref: refs/pull/${{ github.event.issue.number }}/head
+      - name: Get commit SHA
+        run: |
+          sha=$(git rev-parse HEAD)
+          echo "COMMIT_SHA=$sha" >> $GITHUB_ENV
+      - name: Create App Token
+        uses: actions/create-github-app-token@v1
+        id: app-token
+        with:
+          app-id: ${{ secrets.APP_ID }}
+          private-key: ${{ secrets.APP_PRIVATE_KEY }}
+          skip-token-revoke: true
+      - name: Create in progress check
+        uses: LouisBrunner/[email protected]
+        with:
+          token: ${{ steps.app-token.outputs.token }}
+          sha: ${{ env.COMMIT_SHA }}
+          name: Run CMSSW 21034.1
+          status: in_progress
+          details_url: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}
+          output: |
+            {"title": "This check has started...", "summary": "The logs can be found [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }})."}
       - name: Get CMSSW branch name
         env:
           COMMENT_BODY: ${{ github.event.comment.body }}
@@ -78,14 +139,13 @@ jobs:
           cmssw_branch=
           while IFS= read -r line; do
             echo "$line"
-            if [[ $line == *"/run cmssw"* ]]; then
+            if [[ $line == "/run cmssw"* ]]; then
               # Check if there is a branch after "/run cmssw"
               words=($line)
               cmssw_branch="${words[2]}"
               # Validate the extracted branch to avoid code injection
-              if ! [[ $cmssw_branch =~ ^[[:alnum:]_-]+$ ]]; then
-                echo "Branch name is invalid. Ignoring..."
-                cmssw_branch=
+              if [ -n "$cmssw_branch" ]; then
+                cmssw_branch=$(git check-ref-format --branch $cmssw_branch || echo "default")
               fi
             fi
           done <<< "$COMMENT_BODY"
@@ -95,8 +155,9 @@ jobs:
           echo "Using CMSSW branch: $cmssw_branch"
           echo "cmssw-branch=$cmssw_branch" >> $GITHUB_ENV
       - name: Build and run PR
+        timeout-minutes: 200
         id: build-and-run
-        uses: SegmentLinking/TrackLooper-actions/cmssw@v1
+        uses: SegmentLinkingTests/TrackLooper-actions/cmssw@v1
         with:
           pr-number: ${{ github.event.issue.number }}
           cmssw-branch: ${{ env.cmssw-branch }}
@@ -127,5 +188,23 @@ jobs:
               issue_number: context.issue.number,
               owner: context.repo.owner,
               repo: context.repo.repo,
-              body: `There was a problem while building and running with CMSSW. You can find a log of the job [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}).`
+              body: `There was a problem while building and running with CMSSW. The logs can be found [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}).`
             })
+      - name: Create App Token
+        if: always()
+        uses: actions/create-github-app-token@v1
+        id: app-token-end
+        with:
+          app-id: ${{ secrets.APP_ID }}
+          private-key: ${{ secrets.APP_PRIVATE_KEY }}
+      - name: Create completed check
+        uses: LouisBrunner/[email protected]
+        if: always()
+        with:
+          token: ${{ steps.app-token-end.outputs.token }}
+          sha: ${{ env.COMMIT_SHA }}
+          name: Run CMSSW 21034.1
+          conclusion: ${{ job.status }}
+          details_url: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}
+          output: |
+            {"title": "Status: ${{ job.status }}", "summary": "The logs can be found [here](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }})."}

README.md

@@ -1,5 +1,6 @@
 # TrackLooper
 
+# test
 
 ## Quick Start