added ehdenRaPRediction shiny

Spayralbe · Jan 22, 2020 · 5bee09b · 5bee09b
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diff --git a/ehdenRaPrediction/PLPViewer.Rproj b/ehdenRaPrediction/PLPViewer.Rproj
@@ -0,0 +1,13 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
diff --git a/ehdenRaPrediction/data/Analysis_118/plpResult.rds b/ehdenRaPrediction/data/Analysis_118/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_121/plpResult.rds b/ehdenRaPrediction/data/Analysis_121/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_13/plpResult.rds b/ehdenRaPrediction/data/Analysis_13/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_15/plpResult.rds b/ehdenRaPrediction/data/Analysis_15/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_35/plpResult.rds b/ehdenRaPrediction/data/Analysis_35/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_37/plpResult.rds b/ehdenRaPrediction/data/Analysis_37/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_45/plpResult.rds b/ehdenRaPrediction/data/Analysis_45/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_47/plpResult.rds b/ehdenRaPrediction/data/Analysis_47/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_49/plpResult.rds b/ehdenRaPrediction/data/Analysis_49/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_61/plpResult.rds b/ehdenRaPrediction/data/Analysis_61/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_63/plpResult.rds b/ehdenRaPrediction/data/Analysis_63/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_65/plpResult.rds b/ehdenRaPrediction/data/Analysis_65/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_67/plpResult.rds b/ehdenRaPrediction/data/Analysis_67/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_69/plpResult.rds b/ehdenRaPrediction/data/Analysis_69/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_71/plpResult.rds b/ehdenRaPrediction/data/Analysis_71/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_83/plpResult.rds b/ehdenRaPrediction/data/Analysis_83/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_85/plpResult.rds b/ehdenRaPrediction/data/Analysis_85/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_87/plpResult.rds b/ehdenRaPrediction/data/Analysis_87/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_96/plpResult.rds b/ehdenRaPrediction/data/Analysis_96/plpResult.rds
diff --git a/ehdenRaPrediction/data/Analysis_99/plpResult.rds b/ehdenRaPrediction/data/Analysis_99/plpResult.rds
diff --git a/ehdenRaPrediction/data/Validation/CCAE/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/CCAE/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/CCAE/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/CCAE/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/CCAE/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/CCAE/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/CCAE/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/CCAE/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/CCAE/Analysis_47/validationResult.rds b/ehdenRaPrediction/data/Validation/CCAE/Analysis_47/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/CCAE/Analysis_69/validationResult.rds b/ehdenRaPrediction/data/Validation/CCAE/Analysis_69/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/Estonia/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/Estonia/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/Estonia/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/Estonia/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/Estonia/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/Estonia/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/Estonia/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/Estonia/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/Estonia/Analysis_47/validationResult.rds b/ehdenRaPrediction/data/Validation/Estonia/Analysis_47/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/Estonia/Analysis_69/validationResult.rds b/ehdenRaPrediction/data/Validation/Estonia/Analysis_69/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IPCI-HI-LARIOUS-RA/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/IPCI-HI-LARIOUS-RA/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IPCI-HI-LARIOUS-RA/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/IPCI-HI-LARIOUS-RA/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_AMBEMR/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_AUS/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_AUS/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_AUS/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_AUS/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_GERMANY/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_GERMANY/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_GERMANY/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_GERMANY/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_47/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_47/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_69/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_HOSPITAL/Analysis_69/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_LPDFRANCE/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_LPDFRANCE/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_LPDFRANCE/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_LPDFRANCE/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/IQVIA_THIN/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/JMDC/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/JMDC/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/JMDC/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/JMDC/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/JMDC/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/JMDC/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/JMDC/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/JMDC/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/JMDC/Analysis_47/validationResult.rds b/ehdenRaPrediction/data/Validation/JMDC/Analysis_47/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/JMDC/Analysis_69/validationResult.rds b/ehdenRaPrediction/data/Validation/JMDC/Analysis_69/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCD/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCD/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCD/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCD/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCD/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCD/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCD/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCD/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCD/Analysis_47/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCD/Analysis_47/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCD/Analysis_69/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCD/Analysis_69/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCR/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCR/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCR/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCR/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCR/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCR/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCR/Analysis_37/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCR/Analysis_37/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCR/Analysis_47/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCR/Analysis_47/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/MDCR/Analysis_69/validationResult.rds b/ehdenRaPrediction/data/Validation/MDCR/Analysis_69/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/PanTher/Analysis_13/validationResult.rds b/ehdenRaPrediction/data/Validation/PanTher/Analysis_13/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/PanTher/Analysis_15/validationResult.rds b/ehdenRaPrediction/data/Validation/PanTher/Analysis_15/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/PanTher/Analysis_35/validationResult.rds b/ehdenRaPrediction/data/Validation/PanTher/Analysis_35/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/PanTher/Analysis_47/validationResult.rds b/ehdenRaPrediction/data/Validation/PanTher/Analysis_47/validationResult.rds
diff --git a/ehdenRaPrediction/data/Validation/PanTher/Analysis_69/validationResult.rds b/ehdenRaPrediction/data/Validation/PanTher/Analysis_69/validationResult.rds
diff --git a/ehdenRaPrediction/data/settings.csv b/ehdenRaPrediction/data/settings.csv
@@ -0,0 +1,21 @@
+"outcomeId","cohortId","modelSettingsId","analysisId","devDatabase","populationSettingId","modelSettingId","covariateSettingId","modelSettingName","addExposureDaysToStart","riskWindowStart","addExposureDaysToEnd","riskWindowEnd","plpDataFolder","studyPopFile","plpResultFolder","cohortName","outcomeName"
+183,257,2,37,"dod",1,1,2,"Lasso Logistic Regression",0,1,0,730,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L1_T257_O183.rds","./EHDENRAPredictionResults/Analysis_37","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Stroke (ischemic or hemorrhagic) events (any visit)"
+183,257,1,15,"dod",1,1,1,"Lasso Logistic Regression",0,1,0,730,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L1_T257_O183.rds","./EHDENRAPredictionResults/Analysis_15","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Stroke (ischemic or hemorrhagic) events (any visit)"
+185,257,2,35,"dod",1,1,2,"Lasso Logistic Regression",0,1,0,730,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L1_T257_O185.rds","./EHDENRAPredictionResults/Analysis_35","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Acute myocardial infarction events (in any visit)"
+185,257,1,13,"dod",1,1,1,"Lasso Logistic Regression",0,1,0,730,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L1_T257_O185.rds","./EHDENRAPredictionResults/Analysis_13","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Acute myocardial infarction events (in any visit)"
+193,257,4,85,"dod",2,1,2,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O193.rds","./EHDENRAPredictionResults/Analysis_85","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Pancytopenia events using diagnoses and measurements"
+193,257,3,63,"dod",2,1,1,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O193.rds","./EHDENRAPredictionResults/Analysis_63","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Pancytopenia events using diagnoses and measurements"
+197,257,3,49,"dod",2,1,1,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O197.rds","./EHDENRAPredictionResults/Analysis_49","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Opportunistic Infections"
+197,257,4,71,"dod",2,1,2,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O197.rds","./EHDENRAPredictionResults/Analysis_71","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Opportunistic Infections"
+206,258,5,96,"dod",3,1,1,"Lasso Logistic Regression",0,365,0,1826,"./EHDENRAPredictionResults/PlpData_L1_T258","./EHDENRAPredictionResults/StudyPop_L3_T258_O206.rds","./EHDENRAPredictionResults/Analysis_96","[EHDEN RA] Female new users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Persons with a Malignant neoplasm of breast 1 dx"
+206,258,6,118,"dod",3,1,2,"Lasso Logistic Regression",0,365,0,1826,"./EHDENRAPredictionResults/PlpData_L2_T258","./EHDENRAPredictionResults/StudyPop_L3_T258_O206.rds","./EHDENRAPredictionResults/Analysis_118","[EHDEN RA] Female new users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Persons with a Malignant neoplasm of breast 1 dx"
+208,258,6,120,"dod",3,1,2,"Lasso Logistic Regression",0,365,0,1826,"./EHDENRAPredictionResults/PlpData_L2_T258","./EHDENRAPredictionResults/StudyPop_L3_T258_O208.rds","./EHDENRAPredictionResults/Analysis_120","[EHDEN RA] Female new users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Persons with a Malignant neoplasm of uterus 1 dx"
+208,258,5,98,"dod",3,1,1,"Lasso Logistic Regression",0,365,0,1826,"./EHDENRAPredictionResults/PlpData_L1_T258","./EHDENRAPredictionResults/StudyPop_L3_T258_O208.rds","./EHDENRAPredictionResults/Analysis_98","[EHDEN RA] Female new users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Persons with a Malignant neoplasm of uterus 1 dx"
+218,257,5,99,"dod",3,1,1,"Lasso Logistic Regression",0,365,0,1826,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L3_T257_O218.rds","./EHDENRAPredictionResults/Analysis_99","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Persons with a Malignant neoplasm of colon and rectum 1 dx"
+218,257,6,121,"dod",3,1,2,"Lasso Logistic Regression",0,365,0,1826,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L3_T257_O218.rds","./EHDENRAPredictionResults/Analysis_121","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Persons with a Malignant neoplasm of colon and rectum 1 dx"
+253,257,4,67,"dod",2,1,2,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O253.rds","./EHDENRAPredictionResults/Analysis_67","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Serious Infection, opportunistic infections and other infections of interest event"
+253,257,3,45,"dod",2,1,1,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O253.rds","./EHDENRAPredictionResults/Analysis_45","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Serious Infection, opportunistic infections and other infections of interest event"
+259,257,4,87,"dod",2,1,2,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O259.rds","./EHDENRAPredictionResults/Analysis_87","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Leukopenia events using diagnoses and measurements"
+259,257,3,65,"dod",2,1,1,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O259.rds","./EHDENRAPredictionResults/Analysis_65","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Leukopenia events using diagnoses and measurements"
+260,257,4,83,"dod",2,1,2,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L2_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O260.rds","./EHDENRAPredictionResults/Analysis_83","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Pancytopenia or leukopenia events using diagnoses and measurements"
+260,257,3,61,"dod",2,1,1,"Lasso Logistic Regression",0,1,0,90,"./EHDENRAPredictionResults/PlpData_L1_T257","./EHDENRAPredictionResults/StudyPop_L2_T257_O260.rds","./EHDENRAPredictionResults/Analysis_61","[EHDEN RA] New users of methoxtrexate monotherapy used for PLP","[EHDEN RA] Pancytopenia or leukopenia events using diagnoses and measurements"
diff --git a/ehdenRaPrediction/global.R b/ehdenRaPrediction/global.R
@@ -0,0 +1,14 @@
+# uncomment if running standalone
+##runPlp <- readRDS(file.path("data","results.rds"))
+##validatePlp <- readRDS(file.path("data","extValidation.rds"))
+source("utils.R")
+analysesLocation <- file.path("data")
+allPerformance <- summaryPlpAnalyses(analysesLocation)
+plpResultLocation <- allPerformance[,c('plpResultLocation', 'plpResultLoad')]
+#allPerformance$combinedModelSettingName <- paste0(allPerformance$modelSettingName,'-', allPerformance$modelSettingsId
+formatPerformance <- allPerformance[,c('analysisId','devDatabase','valDatabase','cohortName','outcomeName','modelSettingName','riskWindowStart', 'riskWindowEnd', 'AUC','AUPRC', 'populationSize','outcomeCount','incidence',
+                                       'addExposureDaysToStart','addExposureDaysToEnd')]
+colnames(formatPerformance) <- c('Analysis','Dev', 'Val', 'T', 'O','Model', 'TAR start', 'TAR end', 'AUC','AUPRC', 'T Size','O Count','O Incidence (%)', 'addExposureDaysToStart','addExposureDaysToEnd')
+
+
+