gh actions and incr version

.github/workflows/python-package.yml

@@ -0,0 +1,36 @@
+name: Python Package using Conda
+
+on: [push]
+
+jobs:
+  build-and-test:
+    name: Test on (${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["ubuntu-latest"]
+    steps:
+      - uses: actions/checkout@v2
+      - uses: s-weigand/setup-conda@v1
+        with:
+          python-version: 3.8
+      - name: Which python
+        run: |
+          conda --version
+          which python
+      - name: Install dependencies
+        run: |
+          pip install https://github.com/SpikeInterface/spikeextractors/archive/master.zip
+          pip install https://github.com/SpikeInterface/spiketoolkit/archive/master.zip
+          pip install https://github.com/SpikeInterface/spikesorters/archive/master.zip
+          pip install .
+          pip install pytest
+          pip install herdingspikes==0.3.7
+          pip install pyqt5
+          pip install hdbscan
+          pip install loky
+          pip install tridesclous>=1.6.3
+      - name: Test with pytest and build coverage report
+        run: |
+          pytest

.github/workflows/python-publish.yml

@@ -0,0 +1,46 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+name: Test and Upload Python Package
+
+on:
+  push:
+    tags:
+       - '*'
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python 3.8
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.6
+      - name: Add conda to system path
+        run: |
+          # $CONDA is an environment variable pointing to the root of the miniconda directory
+          echo $CONDA/bin >> $GITHUB_PATH
+      - name: Install dependencies
+        run: |
+          pip install .
+          pip install pytest
+          pip install setuptools wheel twine
+          pip install herdingspikes==0.3.7
+          pip install pyqt5
+          pip install hdbscan
+          pip install loky
+          pip install tridesclous>=1.6.3
+          pip install
+      - name: Test with pytest and build coverage report
+        run: |
+          pytest
+      - name: Publish on PyPI
+        env:
+          TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+          TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+        run: |
+          python setup.py sdist bdist_wheel
+          twine upload dist/*

setup.py

@@ -24,9 +24,9 @@
         'pandas',
         'networkx',
         'joblib',
-        'spikeextractors>=0.9.3',
-        'spiketoolkit>=0.7.2',
-        'spikesorters>=0.4.3',
+        'spikeextractors>=0.9.7',
+        'spiketoolkit>=0.7.6',
+        'spikesorters>=0.4.5',
     ],
     classifiers=(
         "Programming Language :: Python :: 3",

spikecomparison/version.py

@@ -1 +1 @@
-version = '0.3.2'
+version = '0.3.3'