Add tests for windows and mac #5
Workflow file for this run
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| name: Complete tests | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 12 * * 0" # Weekly on Sunday at noon UTC | |
| pull_request: | |
| types: [synchronize, opened, reopened] | |
| branches: | |
| - main | |
| env: | |
| KACHERY_CLOUD_CLIENT_ID: ${{ secrets.KACHERY_CLOUD_CLIENT_ID }} | |
| KACHERY_CLOUD_PRIVATE_KEY: ${{ secrets.KACHERY_CLOUD_PRIVATE_KEY }} | |
| jobs: | |
| run: | |
| name: ${{ matrix.os }} Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest, macos-13, windows-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install packages | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "CI Almighty" | |
| python -m pip install -U pip # Official recommended way | |
| pip install -e .[test,extractors,streaming_extractors,full] | |
| shell: bash | |
| - name: Installad datalad | |
| run: | | |
| pip install datalad-installer | |
| if [ ${{ runner.os }} = 'Linux' ]; then | |
| datalad-installer --sudo ok git-annex --method datalad/packages | |
| elif [ ${{ runner.os }} = 'macOS' ]; then | |
| datalad-installer --sudo ok git-annex --method brew | |
| elif [ ${{ runner.os }} = 'Windows' ]; then | |
| datalad-installer --sudo ok git-annex --method datalad/git-annex:release | |
| fi | |
| pip install datalad | |
| git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency | |
| shell: bash | |
| - name: Installad datalad on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| pip install datalad-installer | |
| datalad-installer --sudo ok git-annex --method datalad/packages | |
| pip install datalad | |
| git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency | |
| - name: Install datalad on Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| pip install datalad-installer | |
| datalad-installer --sudo ok git-annex --method datalad/git-annex:release | |
| pip install datalad | |
| git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency | |
| - name: Install datalad on Mac | |
| if: runner.os == 'macOS' | |
| run: | | |
| pip install datalad-installer | |
| datalad-installer --sudo ok git-annex --method brew | |
| pip install datalad | |
| git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency | |
| - name: run tests | |
| env: | |
| HDF5_PLUGIN_PATH: ${{ github.workspace }}/hdf5_plugin_path_maxwell | |
| run: | | |
| source ${{ github.workspace }}/test_env/bin/activate | |
| pytest -m "not sorters_external" --cov=./ --cov-report xml:./coverage.xml -vv -ra --durations=0 | tee report_full.txt; test ${PIPESTATUS[0]} -eq 0 || exit 1 | |
| echo "# Timing profile of full tests" >> $GITHUB_STEP_SUMMARY | |
| pip install tabulate | |
| python ./.github/build_job_summary.py report_full.txt >> $GITHUB_STEP_SUMMARY | |
| cat $GITHUB_STEP_SUMMARY | |
| rm report_full.txt |