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Allow auto_merge to work with fast_templates #2551

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merged 5 commits into from
Mar 29, 2024
Merged

Allow auto_merge to work with fast_templates #2551

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246218b
Allow `auto_merge` to work with `fast_templates`
DradeAW Mar 6, 2024
a5001f2
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 6, 2024
2268c3b
Merge branch 'main' into fix_merge_units_templates
DradeAW Mar 27, 2024
08d1d55
Cleanup
DradeAW Mar 27, 2024
a28012a
Merge branch 'main' into fix_merge_units_templates
alejoe91 Mar 27, 2024
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7 changes: 6 additions & 1 deletion src/spikeinterface/curation/auto_merge.py
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Original file line number Diff line number Diff line change
Expand Up @@ -189,7 +189,12 @@ def get_potential_auto_merge(

# STEP 5 : check if potential merge with CC also have template similarity
if "template_similarity" in steps:
templates = sorting_analyzer.get_extension("templates").get_templates(operator="average")
templates_ext = sorting_analyzer.get_extension("templates") or sorting_analyzer.get_extension("fast_templates")
assert (
templates_ext is not None
), "auto_merge with template_similarity requires a SortingAnalyzer with extension templates or fast_templates"

templates = templates_ext.get_templates(operator="average")
templates_diff = compute_templates_diff(
sorting, templates, num_channels=num_channels, num_shift=num_shift, pair_mask=pair_mask
)
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