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human 0.5.0

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@haowang-bioinfo haowang-bioinfo released this 16 Oct 09:51
  • Features (PR #42):
    • Upload curateMitochMembraneComp.m for curating reactions related to the inner mitochondrial membrane compartment [i]
      • 4 duplicated reactions related to the electron transport chain were removed
      • 2 unused reactions (r1330 and r1331) were constrained (ub=lb=0)
      • 15 electrogenic proton-transporting rxns were constrained by preventing protons from mitochondria to cytosol compartments
      • reaction LPAMtm was reversed in reaction direction
      • 58 electrogenic reactions involving proton transport between mitochondria and cytosol compartments were modified through replacing H+[c] with H+[i]
      • All modifications were saved to curateMitochMembraneComp_rxnChanges.tsv for tracking the changes
  • Chore:
    • Update rxnAssoc.mat array structure by adding the 4 electron transport chain related reaction pairs