fix multiqc folder creation

TRISTAN-ORF · Dec 2, 2024 · 720cacd · 720cacd
1 parent 3b2e0a3
commit 720cacd
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/transcript_transformer/processing.py b/transcript_transformer/processing.py
@@ -370,7 +370,7 @@ def construct_output_table(
         # only data and indices of sparse object are required (all counts are summed over read lengths)
         for h in ["data", "indices", "indptr", "shape"]:
             if parallel:
-                ribo_data = np.add.reduce(
+                counts = np.add.reduce(
                     [
                         np.array(h5py.File(a)[f"{p}/{h}"])[df_ribo["h5_idx"]]
                         for a, p in ribo_paths

diff --git a/transcript_transformer/ribotie.py b/transcript_transformer/ribotie.py
@@ -229,7 +229,7 @@ def main():
             )
             if df is not None:
                 csv_to_gtf(args.h5_path, df, out_prefix, args.exclude_annotated)
-                os.makedirs(f"{args.out_prefix}/multiqc", exist_ok=True)
+                os.makedirs(f"{os.path.dirname(args.out_prefix)}/multiqc", exist_ok=True)
                 create_multiqc_reports(
                     df, f"{os.path.dirname(args.out_prefix)}/multiqc/{ribo_set_str}"
                 )