updates system dependencies in action

.github/workflows/rebuild_site.yaml

@@ -22,6 +22,7 @@ jobs:
       - name: Install System Dependencies
         run: |
           sudo apt update
+          sudo apt install -y cmake
           sudo apt install -y gdal-bin
           sudo apt install -y git
           sudo apt install -y libcurl4-openssl-dev
@@ -31,7 +32,6 @@ jobs:
           sudo apt install -y libgdal-dev
           sudo apt install -y libgeos-dev
           sudo apt install -y libglpk-dev
-          sudo apt install -y libgmp3-dev
           sudo apt install -y libharfbuzz-dev
           sudo apt install -y libicu-dev
           sudo apt install -y libjpeg-dev

.github/workflows/rebuild_system_dependencies.r

@@ -35,9 +35,13 @@ packages <- read_json("renv.lock") |>
   }) |>
   flatten_chr() |>
   unique() |>
-  sort() |>
-  str_remove("^apt-get install -y ") |>
-  paste(collapse = " ")
+  sort()
 
-# copy the results of this into the action script
-paste("sudo apt update && sudo apt upgrade", packages)
+paste0(
+  "sudo apt update\n",
+  paste(
+    "sudo",
+    stringr::str_remove(packages, "-get"),
+    collapse = "\n"
+  )
+) |> clipr::write_clip()