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More work on VarNameVector#637

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mhauru merged 76 commits intotorfjelde/varnamevectorTuringLang/DynamicPPL.jl:torfjelde/varnamevectorfrom mhauru/varnamevectorTuringLang/DynamicPPL.jl:mhauru/varnamevectorCopy head branch name to clipboardSep 3, 2024

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Commits on Apr 16, 2024

• Merge branch 'master' into torfjelde/transformations

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• Merge branch 'master' into torfjelde/transformations

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Commits on Jun 21, 2024

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Commits on Jun 27, 2024

• Merge remote-tracking branch 'origin/torfjelde/transformations' into torfjelde/transformations

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Commits on Jul 14, 2024

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Commits on Jul 19, 2024

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Commits on Jul 21, 2024

• Type-stability tests are now correctly using rand_prior_true instead

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• getindex_internal now calls getindex instead of view, as the

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• Removed seemingly unnecessary definition of getindex_internal

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Commits on Jul 28, 2024

• Fixed references to newmetadata which has been replaced by replace_values

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• Made implementation of recombine more explicit

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• Added docstrings for untyped_varinfo and typed_varinfo

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• Added TODO comment about implementing view for VarInfo

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• Fixed potential infinite recursion as suggested by @mhauru

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• added docstring to `from_vec_trnasform_for_size

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• Replaced references to vectorize(dist, x) with tovec(x)

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• Fixed docstring

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• Update src/extract_priors.jl

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• Bump minor version since this is a breaking change

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• Merge remote-tracking branch 'origin/torfjelde/transformations' into torfjelde/transformations

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• Merge branch 'master' into torfjelde/transformations

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Commits on Jul 30, 2024

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• Update src/varinfo.jl

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Commits on Aug 6, 2024

• Update src/extract_priors.jl

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• Added fix for product distributions of targets with changing support + tests

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• Addeed tests for product of distributions with dynamic support

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Commits on Aug 8, 2024

• Merge remote-tracking branch 'origin/torfjelde/transformations' into torfjelde/varnamevector

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• Fix typos, improve docstrings

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• Use Accessors rather than Setfield

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• Simplify group_by_symbol

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• Add short_varinfo_name(::VectorVarInfo)

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• Add tests for subset

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• Export VectorVarInfo

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• Tighter type bound for has_varnamevector

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• Add some VectorVarName methods

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• Add todo notes, remove dead code, fix a typo.

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Commits on Aug 14, 2024

• Bug fixes and small improvements

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Commits on Aug 15, 2024

• VarNameVector improvements

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Commits on Aug 19, 2024

• Improve generated_quantities and its tests

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• Improvement to VarNameVector

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• Fix a test to work with VectorVarName

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• Fix generated_quantities

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Commits on Aug 21, 2024

• Fix type stability issues

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• Various VarNameVector fixes and improvements

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Commits on Aug 22, 2024

• Merge remote-tracking branch 'origin/master' into mhauru/varnamevector

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• Bump version number

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• Merge remote-tracking branch 'origin/torfjelde/varnamevector' into mhauru/varnamevector

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• Improvements to generated_quantities

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• Add fallback implementation of findinds for VarNameVector

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• Rename VarNameVector to VarNamedVector

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• More renaming of VNV. Remove unused VarNamedVector.metadata field.

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Commits on Aug 23, 2024

• Rename FromVec to ReshapeTransform

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Commits on Aug 28, 2024

• Progress towards having VarNamedVector as storage for SimpleVarInfo

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Commits on Aug 29, 2024

• Fix unflatten(vnv::VarNamedVector, vals)

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• More work on SimpleVarInfo{VarNamedVector}

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• More tests for SimpleVarInfo{VarNamedVector}

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• More tests for SimpleVarInfo{VarNamedVector}

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Commits on Aug 30, 2024

• Respond to review feedback

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• Add float_type_with_fallback(::Type{Union{}})

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• Move some VNV functions to the correct file

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• Fix push! for VNV

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• Rename VNV.is_transformed to VNV.is_unconstrained

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• Improve VNV docstring

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• Add VNV inner constructor checks

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• Reorganise parts of VNV code

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Commits on Sep 2, 2024

• Documentation and small fixes for VNV

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• Rename loosen_types!! and tighten_types, add docstrings and doctests

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• Rename VarNameVector to VarNamedVector in docs

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• Documentation and small fixes to VNV

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• Fix subset(::VarNamedVector, args...) for unconstrained variables.

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