data auto-update #754
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # - {os: windows-latest, r: 'release'} | |
| # - {os: macOS-latest, r: 'release'} | |
| # - {os: ubuntu-20.04, r: '3.6', rspm: "https://demo.rstudiopm.com/all/__linux__/fossa/latest"} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://demo.rstudiopm.com/all/__linux__/fossa/latest"} | |
| # - {os: ubuntu-20.04, r: 'devel', rspm: "https://demo.rstudiopm.com/all/__linux__/fossa/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@master | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@master | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| sudo -s eval "$sysreqs" | |
| # https://github.com/r-lib/usethis/blob/master/.github/workflows/R-CMD-check.yaml#L66 | |
| # I had the problem with 3.5 too, hence considered for the whole | |
| # macOS-latest | |
| - name: Install macOS system dependencies | |
| if: matrix.config.os == 'macOS-latest' | |
| # the xml2 thing is a hack / experiment | |
| run: | | |
| brew install imagemagick@6 | |
| Rscript -e "remotes::install_github('r-lib/xml2')" | |
| - name: Install Windows dependencies | |
| if: matrix.config.os == 'windows-latest' | |
| run: | | |
| options(install.packages.check.source = "no") | |
| install.packages("RCurl", type = "win.binary") | |
| remotes::install_github('tidyverse/tidyr') | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| env: | |
| GITHUB_PAT: ${{ secrets.ACTIONS_PRIVATE_PACKAGES }} | |
| run: | | |
| remotes::install_github("UBESP-DCTV/covid19.icuve") | |
| remotes::install_github("sprouffske/growthcurver") | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Configure Git user | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GitHub Actions User" | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| if: runner.os == 'Linux' && matrix.config.r == 'release' && success() | |
| run: covr::codecov() | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |