Update for December 18th

UMGCCFCSS · Dec 18, 2024 · 633693c · 633693c
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diff --git a/data/QCPlots_3L.pdf b/data/QCPlots_3L.pdf
diff --git a/data/QCPlots_4L.pdf b/data/QCPlots_4L.pdf
diff --git a/data/QCPlots_5L.pdf b/data/QCPlots_5L.pdf
diff --git a/data/QCPlots_CS.pdf b/data/QCPlots_CS.pdf
diff --git a/docs/Aurora3L.html b/docs/Aurora3L.html
diff --git a/docs/Aurora4L.html b/docs/Aurora4L.html
diff --git a/docs/Aurora5L.html b/docs/Aurora5L.html
diff --git a/docs/AuroraCS.html b/docs/AuroraCS.html
diff --git a/docs/CytekQCBead.html b/docs/CytekQCBead.html
diff --git a/docs/data/3L/Archive/ArchivedData3L.csv b/docs/data/3L/Archive/ArchivedData3L.csv
@@ -1,4 +1,5 @@
 "DateTime","FSC-Gain","SSC-Gain","SSC-B-Gain","V1-Gain","V2-Gain","V3-Gain","V4-Gain","V5-Gain","V6-Gain","V7-Gain","V8-Gain","V9-Gain","V10-Gain","V11-Gain","V12-Gain","V13-Gain","V14-Gain","V15-Gain","V16-Gain","B1-Gain","B2-Gain","B3-Gain","B4-Gain","B5-Gain","B6-Gain","B7-Gain","B8-Gain","B9-Gain","B10-Gain","B11-Gain","B12-Gain","B13-Gain","B14-Gain","R1-Gain","R2-Gain","R3-Gain","R4-Gain","R5-Gain","R6-Gain","R7-Gain","R8-Gain","Flag-FSC-Gain","Flag-SSC-Gain","Flag-SSC-B-Gain","Flag-V1-Gain","Flag-V2-Gain","Flag-V3-Gain","Flag-V4-Gain","Flag-V5-Gain","Flag-V6-Gain","Flag-V7-Gain","Flag-V8-Gain","Flag-V9-Gain","Flag-V10-Gain","Flag-V11-Gain","Flag-V12-Gain","Flag-V13-Gain","Flag-V14-Gain","Flag-V15-Gain","Flag-V16-Gain","Flag-B1-Gain","Flag-B2-Gain","Flag-B3-Gain","Flag-B4-Gain","Flag-B5-Gain","Flag-B6-Gain","Flag-B7-Gain","Flag-B8-Gain","Flag-B9-Gain","Flag-B10-Gain","Flag-B11-Gain","Flag-B12-Gain","Flag-B13-Gain","Flag-B14-Gain","Flag-R1-Gain","Flag-R2-Gain","Flag-R3-Gain","Flag-R4-Gain","Flag-R5-Gain","Flag-R6-Gain","Flag-R7-Gain","Flag-R8-Gain","FSC-% rCV","SSC-% rCV","SSC-B-% rCV","V1-% rCV","V2-% rCV","V3-% rCV","V4-% rCV","V5-% rCV","V6-% rCV","V7-% rCV","V8-% rCV","V9-% rCV","V10-% rCV","V11-% rCV","V12-% rCV","V13-% rCV","V14-% rCV","V15-% rCV","V16-% rCV","B1-% rCV","B2-% rCV","B3-% rCV","B4-% rCV","B5-% rCV","B6-% rCV","B7-% rCV","B8-% rCV","B9-% rCV","B10-% rCV","B11-% rCV","B12-% rCV","B13-% rCV","B14-% rCV","R1-% rCV","R2-% rCV","R3-% rCV","R4-% rCV","R5-% rCV","R6-% rCV","R7-% rCV","R8-% rCV","Flag-FSC-% rCV","Flag-SSC-% rCV","Flag-SSC-B-% rCV","Flag-V1-% rCV","Flag-V2-% rCV","Flag-V3-% rCV","Flag-V4-% rCV","Flag-V5-% rCV","Flag-V6-% rCV","Flag-V7-% rCV","Flag-V8-% rCV","Flag-V9-% rCV","Flag-V10-% rCV","Flag-V11-% rCV","Flag-V12-% rCV","Flag-V13-% rCV","Flag-V14-% rCV","Flag-V15-% rCV","Flag-V16-% rCV","Flag-B1-% rCV","Flag-B2-% rCV","Flag-B3-% rCV","Flag-B4-% rCV","Flag-B5-% rCV","Flag-B6-% rCV","Flag-B7-% rCV","Flag-B8-% rCV","Flag-B9-% rCV","Flag-B10-% rCV","Flag-B11-% rCV","Flag-B12-% rCV","Flag-B13-% rCV","Flag-B14-% rCV","Flag-R1-% rCV","Flag-R2-% rCV","Flag-R3-% rCV","Flag-R4-% rCV","Flag-R5-% rCV","Flag-R6-% rCV","Flag-R7-% rCV","Flag-R8-% rCV","Violet-Laser Delay","Blue-Laser Delay","Red-Laser Delay","Flag-Violet-Laser Delay","Flag-Blue-Laser Delay","Flag-Red-Laser Delay","Violet-Area Scaling Factor","Blue-Area Scaling Factor","Red-Area Scaling Factor","Flag-Violet-Area Scaling Factor","Flag-Blue-Area Scaling Factor","Flag-Red-Area Scaling Factor","Violet-Laser Power","Blue-Laser Power","Red-Laser Power","Flag-Violet-Laser Power","Flag-Blue-Laser Power","Flag-Red-Laser Power","FSCAreaScalingFactor","Flag-FSCAreaScalingFactor","FlowRate","Flag-FlowRate","Temperature","Flag-Temperature"
+2024-12-17 09:54:59,424,851,121,524,593,801,522,711,627,843,1452,1164,894,696,602,596,933,1083,961,625,365,383,373,313,227,411,354,476,353,273,386,460,560,233,304,388,369,375,386,961,471,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,3.931729,8.280784,1.688585,4.845705,5.242684,5.200247,5.134439,5.322398,5.181529,5.226187,5.093936,5.23606,5.068448,4.998125,4.834831,4.573936,4.729329,4.531783,5.554841,2.812021,2.485062,2.428058,2.228016,2.413106,2.381999,2.370134,2.558107,2.420656,2.682653,2.915439,3.009488,3.326591,4.078091,1.990962,2.209065,2.028061,2.210883,2.470272,2.724386,3.038429,3.774948,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,-26.925,0,27.25,FALSE,FALSE,FALSE,1.239905,1.169977,1.015605,FALSE,FALSE,FALSE,0,0,0,FALSE,FALSE,FALSE,1.193865,FALSE,15.68,FALSE,24.75,FALSE
 2024-12-16 10:05:47,424,851,121,524,593,801,522,711,627,843,1452,1164,894,696,602,596,933,1083,961,625,365,383,373,313,227,411,354,476,353,273,386,460,560,233,304,388,369,375,386,961,471,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,3.937785,8.886333,2.29129,5.555624,5.956178,5.880692,5.878722,6.017342,5.92799,5.950297,5.759408,5.928383,5.737164,5.602275,5.41083,5.156339,5.188684,4.996047,6.219972,2.394027,1.994742,1.958584,1.765164,1.976799,1.88745,1.865591,2.010347,1.901015,2.145647,2.364026,2.395291,2.712718,3.418915,1.83336,2.051081,1.884864,2.110644,2.319218,2.587153,2.841108,3.767916,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,-26.925,0,27.25,FALSE,FALSE,FALSE,1.246374,1.183892,1.00689,FALSE,FALSE,FALSE,0,0,0,FALSE,FALSE,FALSE,1.208815,FALSE,17.68,FALSE,24.38,FALSE
 2024-12-13 10:16:01,424,836,121,510,571,785,508,693,611,814,1384,1144,860,669,577,584,905,1066,1066,608,361,376,362,305,223,399,346,464,352,270,383,463,610,223,293,383,365,372,384,968,525,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,3.37762,8.085613,3.078573,4.982527,5.342388,5.313805,5.280492,5.423265,5.366511,5.324473,5.135572,5.337741,5.087859,5.070455,4.804451,4.612975,4.636155,4.546519,6.906125,2.039065,1.591617,1.531047,1.386654,1.577968,1.509639,1.492833,1.663425,1.498103,1.770596,1.97253,1.950028,2.416503,4.603376,2.177992,2.289935,1.862616,2.155646,2.321693,2.523424,3.044333,5.7647,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,-26.975,0,27.225,FALSE,FALSE,FALSE,1.245917,1.186174,1.008702,FALSE,FALSE,FALSE,0,0,0,FALSE,FALSE,FALSE,1.210194,FALSE,15.91,FALSE,24.75,FALSE
 2024-12-13 09:56:40,424,844,120,525,583,790,514,698,614,827,1405,1132,872,661,583,597,932,1113,1199,604,355,369,356,298,216,392,336,454,345,269,383,471,661,223,287,384,372,376,388,953,584,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,3.69886,8.82835,3.198156,5.950762,6.372953,6.383766,6.405768,6.541378,6.478053,6.499056,6.436609,6.466254,6.224124,6.200166,5.884171,5.607236,5.635184,5.564083,9.003951,1.999386,1.557592,1.486041,1.353911,1.544756,1.459992,1.46152,1.626155,1.501244,2.013926,2.265416,2.261703,3.066134,6.628679,2.308045,2.269716,1.740477,2.29563,2.446694,2.569592,3.390561,7.882956,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,-26.95,0,27.225,FALSE,FALSE,FALSE,1.251555,1.197265,0.989513,FALSE,FALSE,FALSE,0,0,0,FALSE,FALSE,FALSE,1.22376,FALSE,16.45,FALSE,23.88,FALSE

diff --git a/docs/data/3L/Archive/BeadData3L.csv b/docs/data/3L/Archive/BeadData3L.csv
@@ -1,4 +1,6 @@
 "SAMPLE","DateTime","DATE","TIME","Timepoint","CYT","CYTSN","OP","SSC-H_Gain","SSC-A_Gain","V1-A_Gain","V2-A_Gain","V3-A_Gain","V4-A_Gain","V5-A_Gain","V6-A_Gain","V7-A_Gain","V8-A_Gain","V9-A_Gain","V10-A_Gain","V11-A_Gain","V12-A_Gain","V13-A_Gain","V14-A_Gain","V15-A_Gain","V16-A_Gain","FSC-H_Gain","FSC-A_Gain","SSC-B-H_Gain","SSC-B-A_Gain","B1-A_Gain","B2-A_Gain","B3-A_Gain","B4-A_Gain","B5-A_Gain","B6-A_Gain","B7-A_Gain","B8-A_Gain","B9-A_Gain","B10-A_Gain","B11-A_Gain","B12-A_Gain","B13-A_Gain","B14-A_Gain","R1-A_Gain","R2-A_Gain","R3-A_Gain","R4-A_Gain","R5-A_Gain","R6-A_Gain","R7-A_Gain","R8-A_Gain","Violet_LaserDelay","Blue_LaserDelay","Red_LaserDelay","Violet_AreaScalingFactor","Blue_AreaScalingFactor","Red_AreaScalingFactor","SSC-H","SSC-A","V1-A","V2-A","V3-A","V4-A","V5-A","V6-A","V7-A","V8-A","V9-A","V10-A","V11-A","V12-A","V13-A","V14-A","V15-A","V16-A","FSC-H","FSC-A","SSC-B-H","SSC-B-A","B1-A","B2-A","B3-A","B4-A","B5-A","B6-A","B7-A","B8-A","B9-A","B10-A","B11-A","B12-A","B13-A","B14-A","R1-A","R2-A","R3-A","R4-A","R5-A","R6-A","R7-A","R8-A"
+"17 After",2024-12-17 09:57:17.28,2024-12-17,9H 57M 17.28S,"After","Aurora","R0026","Flow Core",846,846,529,592,809,527,722,628,846,1446,1191,897,705,615,604,938,1097,954,426,426,124,124,637,374,395,379,318,232,423,363,485,364,279,397,469,558,242,311,397,374,384,396,1011,462,-26.925,0,27.25,1.24,1.17,1.02,2008717.5,2015423,604164.46875,1278346.1875,1397779,1247816.3125,1073089.1875,764938.625,897045.78125,750722.46875,778788,1167649.625,512824.796875,455881.078125,523551.078125,468586.6875,499623.890625,579984.625,1982100.5,2010996.375,1976732.5,1992348.5625,144159.96875,179775.703125,550914.1875,741948.53125,876541.4375,942488.28125,583037.8125,487963.71875,603664.6875,426490.609375,279049.234375,278352.546875,256571.0234375,556993.4375,414300.0625,1099388,2035525.375,1985455.875,1657033.625,1453480.625,1892667.75,2159248.625
+"17 Before",2024-12-17 09:50:52.84,2024-12-17,9H 50M 52.84S,"Before","Aurora","R0026","Flow Core",846,846,522,585,799,521,713,621,835,1429,1179,886,692,602,594,925,1085,983,419,419,121,121,621,365,385,369,310,226,410,350,471,353,272,385,458,565,234,300,388,368,376,386,957,472,-26.925,0,27.25,1.25,1.18,1.01,1996285.5,2011741.5625,596515.15625,1260188.8125,1373730.75,1232902.75,1055301.125,754363.28125,880964.46875,751761.09375,775925.0625,1162621.125,513277.515625,446526.375,515925.359375,458082.765625,499816.171875,602177.28125,1960442.5,2013814.8125,1951688.5,1976369.9375,140940.90625,177178.421875,536701.5625,731276.90625,863511.4375,921438.90625,565992.4375,474121.84375,588326.90625,411626.359375,273642.4375,271953.078125,253233.5234375,571478.09375,405174.484375,1047203.6875,1997329.125,1948105.1875,1619377.8125,1412237.5,1844694.6875,2223861.875
 "16 After",2024-12-16 10:09:08.17,2024-12-16,10H 9M 8.17S,"After","Aurora","R0026","Flow Core",846,846,522,585,799,521,713,621,835,1429,1179,886,692,602,594,925,1085,983,419,419,121,121,621,365,385,369,310,226,410,350,471,353,272,385,458,565,234,300,388,368,376,386,957,472,-26.925,0,27.25,1.25,1.18,1.01,2009675,1835631.5,617132.40625,1257607.6875,1400928.4375,1276537.25,1067027.4375,761194.1875,916736.09375,779596.84375,780958.53125,1186772.6875,531306.71875,470766.09375,529035.1875,468911.953125,508292.265625,556958.8125,1975669.5,2011661.5625,1974041,1884772.9375,142498.640625,178935.40625,545787.28125,749269.875,873074.53125,946241,577875.59375,483831.46875,605488.1875,419271.375,295939.90625,299400.828125,275103.609375,569959.25,425525.59375,1120986,2082243.875,1982644.5,1759326.6875,1470790.125,2013436.25,2138918.375
 "16 Before",2024-12-16 10:02:21.99,2024-12-16,10H 2M 21.99S,"Before","Aurora","R0026","Flow Core",831,831,511,578,780,508,687,608,815,1396,1119,861,655,576,584,911,1083,1122,420,420,121,121,611,358,372,362,304,221,397,340,466,350,271,385,470,652,218,286,380,369,373,385,986,565,-26.975,0,27.225,1.25,1.19,1.01,1957315,1962830.9375,584051.75,1248750.9375,1353741.75,1202835.4375,1023440.5,745022.1875,866955.4375,730285.9375,736527.625,1113288.9375,486175.078125,434612.890625,509261.5,455708.640625,498186.34375,699085.59375,1997403,2026676.75,1986229,2001859.4375,141316.8359375,176377.3671875,533412.0625,727232.71875,858805.15625,911241.40625,562144.5,466625.09375,601172.6875,415776.015625,278739.25,278346.125,266026.953125,678353.46875,395390.171875,1028924.125,1990669.75,1992456.1875,1644883.6875,1451666.0625,2015980.4375,2709452.25
 "13 After",2024-12-13 10:16:39.7,2024-12-13,10H 16M 39.7S,"After","Aurora","R0026","Flow Core",831,831,511,578,780,508,687,608,815,1396,1119,861,655,576,584,911,1083,1122,420,420,121,121,611,358,372,362,304,221,397,340,466,350,271,385,470,652,218,286,380,369,373,385,986,565,-26.975,0,27.225,1.25,1.19,1.01,1998658,1817161.8125,610218.34375,1257632.25,1395436.5625,1260578.3125,1048571.59375,760803.84375,911752.40625,766657.96875,752389.625,1153184.9375,507385.515625,458657.390625,525913.3125,470043.8125,510460.265625,656697.75,1972520,2002203.4375,1972782.5,1887809.5,141131.6640625,175688.96875,536223.375,734697.84375,859698.125,925517.9375,563972,464581.9375,605943.9375,414850.609375,295720.703125,299958.46875,283859.265625,673119.5625,396981.9375,1059984.875,2031238.8125,1990786,1749618.1875,1477125.0625,2094378.0625,2604196.75